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Sample GSM549418 Query DataSets for GSM549418
Status Public on Aug 11, 2010
Title WB-PSLE-5627
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 13
gender: Female
ethnicity: Caucasian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -3.39957 0.6126482
ILMN_2055271 3.099776 0.3175231
ILMN_1736007 3.765268 0.3003953
ILMN_2383229 -2.844496 0.5876153
ILMN_1806310 6.683253 0.2081686
ILMN_1779670 0.9869007 0.3833992
ILMN_2321282 9.599597 0.14361
ILMN_1671474 2.031566 0.3623188
ILMN_1772582 10.29551 0.1291173
ILMN_1735698 14.52435 0.07773386
ILMN_1653355 20.76931 0.03030303
ILMN_1717783 9.37765 0.1449275
ILMN_1705025 6.63488 0.2108037
ILMN_1814316 -10.61756 0.8827404
ILMN_2359168 1.501974 0.3741766
ILMN_1731507 -4.113365 0.6508564
ILMN_1787689 -7.233044 0.7733861
ILMN_1745607 -9.944255 0.8642951
ILMN_2136495 -8.782049 0.8366271
ILMN_1668111 -10.12149 0.8669302

Total number of rows: 48803

Table truncated, full table size 1455 Kbytes.




Supplementary file Size Download File type/resource
GSM549418_4493594564_D_Raw.txt.gz 524.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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