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Sample GSM549407 Query DataSets for GSM549407
Status Public on Aug 11, 2010
Title WB-PSLE-7465
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -11.90133 0.9354414
ILMN_2055271 4.713203 0.259552
ILMN_1736007 -6.293158 0.7312253
ILMN_2383229 -3.081792 0.5546772
ILMN_1806310 10.25941 0.1106719
ILMN_1779670 4.646398 0.2608696
ILMN_2321282 1.52896 0.3754941
ILMN_1671474 4.446777 0.2635046
ILMN_1772582 6.013585 0.2147563
ILMN_1735698 2.595285 0.3267457
ILMN_1653355 17.87183 0.04084321
ILMN_1717783 -16.63185 0.9894598
ILMN_1705025 7.234488 0.1857708
ILMN_1814316 -11.31006 0.9249012
ILMN_2359168 2.479733 0.3306983
ILMN_1731507 -0.06947889 0.4347826
ILMN_1787689 -5.37736 0.685112
ILMN_1745607 -5.869371 0.7075099
ILMN_2136495 -0.8351406 0.4532279
ILMN_1668111 -10.44366 0.9025033

Total number of rows: 48803

Table truncated, full table size 1486 Kbytes.




Supplementary file Size Download File type/resource
GSM549407_4493594553_C_Raw.txt.gz 529.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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