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Sample GSM549402 Query DataSets for GSM549402
Status Public on Aug 11, 2010
Title WB-PSLE-5932
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 16
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -4.594647 0.6126482
ILMN_2055271 26.25349 0.02898551
ILMN_1736007 -0.5679544 0.4374177
ILMN_2383229 -9.575441 0.8260869
ILMN_1806310 -0.5735612 0.4374177
ILMN_1779670 -3.244174 0.5428195
ILMN_2321282 6.009061 0.2450593
ILMN_1671474 0.3352442 0.4123847
ILMN_1772582 -7.916214 0.7536232
ILMN_1735698 8.198404 0.1831357
ILMN_1653355 35.62375 0.01185771
ILMN_1717783 -1.252443 0.4624506
ILMN_1705025 1.533814 0.370224
ILMN_1814316 -9.869318 0.8366271
ILMN_2359168 -14.86173 0.9565217
ILMN_1731507 -5.944857 0.6719368
ILMN_1787689 8.004917 0.1870883
ILMN_1745607 -11.20478 0.8761528
ILMN_2136495 5.45709 0.2542819
ILMN_1668111 -18.65858 0.9881423

Total number of rows: 48803

Table truncated, full table size 1480 Kbytes.




Supplementary file Size Download File type/resource
GSM549402_4493594552_H_Raw.txt.gz 529.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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