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Sample GSM549401 Query DataSets for GSM549401
Status Public on Aug 11, 2010
Title WB-PSLE-5623
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 17
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -2.746098 0.5691699
ILMN_2055271 10.74649 0.1093544
ILMN_1736007 -3.703814 0.6179183
ILMN_2383229 0.572033 0.397892
ILMN_1806310 -2.671564 0.5652174
ILMN_1779670 2.444053 0.3333333
ILMN_2321282 13.0001 0.08959157
ILMN_1671474 7.773075 0.1620553
ILMN_1772582 -5.382018 0.7035573
ILMN_1735698 7.622011 0.1633729
ILMN_1653355 24.47333 0.01976285
ILMN_1717783 -10.20263 0.8787879
ILMN_1705025 7.357431 0.1673254
ILMN_1814316 -6.076354 0.7246377
ILMN_2359168 -3.766445 0.6231884
ILMN_1731507 -8.688264 0.8274045
ILMN_1787689 0.00741579 0.4255599
ILMN_1745607 -7.718376 0.7786561
ILMN_2136495 -17.19353 0.9789196
ILMN_1668111 -10.35293 0.884058

Total number of rows: 48803

Table truncated, full table size 1496 Kbytes.




Supplementary file Size Download File type/resource
GSM549401_4493594552_G_Raw.txt.gz 530.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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