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Sample GSM549390 Query DataSets for GSM549390
Status Public on Aug 11, 2010
Title WB-PSLE-5980
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 17
gender: Female
ethnicity: Asian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -2.168994 0.5362319
ILMN_2055271 12.45692 0.08168643
ILMN_1736007 3.587862 0.2582345
ILMN_2383229 -5.859983 0.7404479
ILMN_1806310 -5.09665 0.6996047
ILMN_1779670 -0.353667 0.4321476
ILMN_2321282 9.390019 0.1185771
ILMN_1671474 3.821967 0.2463768
ILMN_1772582 0.1681833 0.4084322
ILMN_1735698 2.806233 0.2819499
ILMN_1653355 10.33571 0.1027668
ILMN_1717783 -9.635188 0.8945981
ILMN_1705025 -3.184982 0.5810277
ILMN_1814316 -4.852407 0.6785244
ILMN_2359168 -0.4230558 0.4334651
ILMN_1731507 -9.716266 0.8985507
ILMN_1787689 7.114691 0.1501976
ILMN_1745607 -3.970026 0.6310936
ILMN_2136495 -12.64615 0.9591568
ILMN_1668111 -7.593777 0.8181818

Total number of rows: 48803

Table truncated, full table size 1471 Kbytes.




Supplementary file Size Download File type/resource
GSM549390_4493594520_F_Raw.txt.gz 528.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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