NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549370 Query DataSets for GSM549370
Status Public on Aug 11, 2010
Title WB-ASLE-6641
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 31
gender: Male
ethnicity: Caucasian
illness: ASLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -2.69185 0.6534914
ILMN_2055271 9.830896 0.05006588
ILMN_1736007 0.9518429 0.3675889
ILMN_2383229 -0.138698 0.4400527
ILMN_1806310 6.683163 0.0974967
ILMN_1779670 3.94116 0.2028985
ILMN_2321282 5.149301 0.1541502
ILMN_1671474 6.056588 0.1172596
ILMN_1772582 0.1340085 0.4189723
ILMN_1735698 1.762389 0.3188406
ILMN_1653355 14.98046 0.02108037
ILMN_1717783 -3.594459 0.7312253
ILMN_1705025 0.646532 0.3847167
ILMN_1814316 4.581848 0.1805007
ILMN_2359168 -0.577664 0.4769433
ILMN_1731507 -1.709447 0.5744401
ILMN_1787689 -4.452057 0.7957839
ILMN_1745607 5.573979 0.1383399
ILMN_2136495 -1.824052 0.5783926
ILMN_1668111 -6.070265 0.8761528

Total number of rows: 48803

Table truncated, full table size 1471 Kbytes.




Supplementary file Size Download File type/resource
GSM549370_4487653181_K_Raw.txt.gz 524.8 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap