NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549355 Query DataSets for GSM549355
Status Public on Aug 11, 2010
Title WB-Still-6653
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 19
gender: Male
ethnicity: Caucasian
illness: Still
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1809034 -0.7237495 0.4624506
ILMN_1660305 132.0787 0
ILMN_1792173 89.1078 0.001317523
ILMN_1762337 -9.565903 0.9802371
ILMN_2055271 9.920907 0.06060606
ILMN_1736007 0.1866054 0.3939394
ILMN_1814316 -1.706203 0.5454546
ILMN_2359168 -2.057332 0.5757576
ILMN_1731507 -2.716346 0.627141
ILMN_1787689 7.026515 0.09881423
ILMN_1745607 0.08651464 0.400527
ILMN_2136495 -2.343143 0.5902503
ILMN_1668111 -1.70335 0.5428195
ILMN_2295559 2.927792 0.2226614
ILMN_1735045 -6.001925 0.8814229
ILMN_1680754 -2.702026 0.627141
ILMN_2375184 -0.1209676 0.4202898
ILMN_1659452 7.608747 0.09090909
ILMN_1767388 -5.674201 0.8590251
ILMN_1675204 -8.578774 0.9670619

Total number of rows: 48803

Table truncated, full table size 1477 Kbytes.




Supplementary file Size Download File type/resource
GSM549355_4461154022_C_Raw.txt.gz 524.3 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap