NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549328 Query DataSets for GSM549328
Status Public on Aug 11, 2010
Title WB-Still-5666
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 51
gender: Male
ethnicity: Caucasian
illness: Still
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1809034 5.758024 0.1119895
ILMN_1660305 103.8238 0.001317523
ILMN_1792173 106.6222 0.001317523
ILMN_1762337 -4.181462 0.7088274
ILMN_2055271 1.021987 0.2832675
ILMN_1736007 -4.463317 0.7404479
ILMN_1814316 -3.373544 0.6482214
ILMN_2359168 -5.344059 0.8194993
ILMN_1731507 -1.403478 0.4598155
ILMN_1787689 8.273252 0.06455863
ILMN_1745607 -6.451929 0.8959157
ILMN_2136495 -6.394247 0.8959157
ILMN_1668111 -9.824773 1
ILMN_2295559 -6.523599 0.8985507
ILMN_1735045 -4.053915 0.7022398
ILMN_1680754 1.361803 0.2635046
ILMN_2375184 -1.944332 0.4967062
ILMN_1659452 3.918872 0.1646904
ILMN_1767388 1.643672 0.2450593
ILMN_1675204 -8.667436 0.9868248

Total number of rows: 48803

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM549328_4335991058_A_Raw.txt.gz 528.2 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap