|
| Status |
Public on Jan 08, 2024 |
| Title |
WT3SC |
| Sample type |
SRA |
| |
|
| Source name |
Wilms Tumor
|
| Organism |
Homo sapiens |
| Characteristics |
age: 6 years old
Sex: Male
tumor type: anaplastic COG Stage I
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Kapa low input total RNA kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
WT3SC
|
| Data processing |
quality assessment: FastQC
adapter removal: Cutadapt
read quality trimming: Trimmomatic
alignment to Gencode h28: STAR
generation of RPKM: edgeR
Genome_build: Gencode h28 (GRCh38.p12)
Supplementary_files_format_and_content: Raw counts, RPKM
|
| |
|
| Submission date |
Jun 07, 2021 |
| Last update date |
Jan 08, 2024 |
| Contact name |
Brendan H Grubbs |
| Organization name |
University of Southern California
|
| Department |
Obstetrics and Gynecology
|
| Lab |
Grubbs
|
| Street address |
4661 W. Sunset Blvd.
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90027 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE176342 |
Bulk transcriptomics analysis of SIX2+CITED1+ cells from Wilms Tumor |
|
| Relations |
| BioSample |
SAMN19598050 |
| SRA |
SRX11085992 |
