|
| Status |
Public on Oct 22, 2020 |
| Title |
genomic DNA from malignant melanoma clinical sample 1413M |
| Sample type |
genomic |
| |
|
| Source name |
malignant melanoma clinical sample 1413M
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
age: 58
disease state: malignant melanoma
tissue: lymph node
stage (ajcc 7th): 3c
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from primary cell culture or clinical samples using QIAamp DNA FFPE Tissue Kit according to standard instructions.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol.
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip Kit using standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
|
| Description |
Malignant melanoma clinical sample.
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Nov 08, 2019 |
| Last update date |
Oct 22, 2020 |
| Contact name |
Masaki Fukuyo |
| E-mail(s) |
[email protected]
|
| Organization name |
Chiba University
|
| Department |
Department of Molecular Oncology
|
| Street address |
1-8-1 Inohana, Chuo-ku
|
| City |
Chiba |
| ZIP/Postal code |
260-8670 |
| Country |
Japan |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE140170 |
DNA methylation analysis in malignant melanoma clinical samples [EPIC array] |
| GSE140171 |
DNA methylation analysis in malignant melanoma clinical samples |
|
