|
| Status |
Public on Mar 24, 2009 |
| Title |
6T (expression) |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
endometrial cancer
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
histologic type: endometrioid
metastatic phenotype: FIGO I/II and no recurrence
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated from tissue or cell pellets using Rneasy kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Per manufacturer's instructions
|
| |
|
| Channel 2 |
| Source name |
Stratagene Universal RNA
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
histologic type: endometrioid
metastatic phenotype: FIGO I/II and no recurrence
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated from tissue or cell pellets using Rneasy kit (Qiagen).
|
| Label |
Cy5
|
| Label protocol |
Per manufacturer's instructions
|
| |
|
| |
| Hybridization protocol |
Per manufacturer's instructions
|
| Scan protocol |
Agilent Microarray Scanner Bundle
|
| Description |
n/a
|
| Data processing |
Signal intensities were determined using J-express, filtered to remove genes with low signal intensity, batch corrected, and mean-centered across the tumor set.
|
| |
|
| Submission date |
Mar 03, 2009 |
| Last update date |
Mar 23, 2009 |
| Contact name |
Rameen Beroukhim |
| Organization name |
Dana-Farber Cancer Institute
|
| Street address |
450 Brookline Ave
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platform ID |
GPL7260 |
| Series (1) |
| GSE14860 |
Integrated genomic profiling of endometrial carcinoma |
|
