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Platform GPL7260 Query DataSets for GPL7260
Status Public on Oct 08, 2008
Title Agilent-011521 Human 1A Microarray G4110A (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4110A
 
Description
Agilent's Human 1A Oligo Microarray (V2) includes over 17K 60-mer oligonucleotide probes, sourced from the Incyte Foundation Database and are designed to span conserved exons across the transcripts of the targeted full length genes. Coupled with Agilent's probe selection and validation processes, this design method gives the customer maximum confidence in data quality and prevents redundancy in gene coverage.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL885.
 
Submission date Sep 09, 2008
Last update date Apr 06, 2012
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (107) GSM377087, GSM377088, GSM377089, GSM377090, GSM377091, GSM377092 
Series (4)
GSE14860 Integrated genomic profiling of endometrial carcinoma
GSE19287 ATM-dependent Transcriptional Responses to 1.5 Gy Gamma Radiation in Human Lymphocytes
GSE45849 Gene expressioin signatures in human lymphoblastoid cell lines with different ataxia telangiectasia-mutated (ATM) genotypes post sham- or IR-treatment
Relations
Alternative to GPL885

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
A_23_P100001 A_23_P100001 FALSE NM_207446 NM_207446 400451 FAM174B family with sequence similarity 174, member B" Hs.27373 ENST00000327355 THC2462674 ref|NM_207446|ens|ENST00000327355|gb|CR606671|gb|AK075564 chr15:90961852-90961793 hs|15q26.1 Homo sapiens family with sequence similarity 174, member B (FAM174B), mRNA [NM_207446] GO:0016020(membrane)|GO:0016021(integral to membrane) ATCTCATGGAAAAGCTGGATTCCTCTGCCTTACGCAGAAACACCCGGGCTCCATCTGCCA
A_23_P100011 A_23_P100011 FALSE NM_005829 NM_005829 10239 AP3S2 adaptor-related protein complex 3, sigma 2 subunit" Hs.632161 ENST00000336418 NP1208528 ref|NM_005829|ref|NR_023361|ens|ENST00000336418|gb|AK222698 chr15:88179747-88179688 hs|15q26.1 Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), mRNA [NM_005829] GO:0005515(protein binding)|GO:0005794(Golgi apparatus)|GO:0006886(intracellular protein transport)|GO:0008565(protein transporter activity)|GO:0016020(membrane)|GO:0016192(vesicle-mediated transport)|GO:0030117(membrane coat)|GO:0030659(cytoplasmic vesicle membrane)|GO:0031410(cytoplasmic vesicle) TCAAGTATTGGCCTGACATAGAGTCCTTAAGACAAGCAAAGACAAGCAAGGCAAGCACGT
A_23_P10002 A_23_P10002 FALSE NM_025180 NM_025180 80254 CEP63 centrosomal protein 63kDa Hs.443301 ENST00000337090 THC2478602 ref|NM_025180|ref|NM_001042383|ref|NM_001042400|ens|ENST00000337090 chr3:135762950-135763009 hs|3q22.2 Homo sapiens centrosomal protein 63kDa (CEP63), transcript variant 1, mRNA [NM_025180] GO:0005515(protein binding)|GO:0005813(centrosome) ATTTTTGGAAGAGGAGGAACTGAGGTCTCATCACATTCTAGAGCGCTTGGATGCCCATAT
A_23_P100022 A_23_P100022 FALSE NM_014848 NM_014848 9899 SV2B synaptic vesicle glycoprotein 2B Hs.21754 ENST00000330276 THC2464594 ref|NM_014848|ens|ENST00000330276|gb|AB018278|gb|BC030011 chr15:89639333-89639392 hs|15q26.1 Homo sapiens synaptic vesicle glycoprotein 2B (SV2B), mRNA [NM_014848] GO:0001669(acrosome)|GO:0005215(transporter activity)|GO:0006836(neurotransmitter transport)|GO:0008021(synaptic vesicle)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0030054(cell junction)|GO:0031410(cytoplasmic vesicle)|GO:0045202(synapse) ATGTCGGCTGTGGAGGGTTAAAGGGATGAGGCTTTCCTTTGTTTAGCAAATCTGTTCACA
A_23_P100033 A_23_P100033 FALSE NM_001004719 NM_001004719 390538 OR4M2 olfactory receptor, family 4, subfamily M, member 2" Hs.709063 ENST00000332663 THC2604959 ref|NM_001004719|ref|NM_001005500|ref|NR_015416|ens|ENST00000332663 chr15:19870171-19870230 hs|15q11.2 Homo sapiens olfactory receptor, family 4, subfamily M, member 2 (OR4M2), mRNA [NM_001004719] GO:0004872(receptor activity)|GO:0004984(olfactory receptor activity)|GO:0005886(plasma membrane)|GO:0007165(signal transduction)|GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0007608(sensory perception of smell)|GO:0016021(integral to membrane)|GO:0050896(response to stimulus) GCCCCTGAAATGCTCATAGACTTCTTTGTGGAGAGGAAGATAATTTCTTTTGATGGATGC
A_23_P100059 A_23_P100059 FALSE NM_194272 NM_194272 348093 RBPMS2 RNA binding protein with multiple splicing 2 Hs.436518 ENST00000300069 THC2472982 ref|NM_194272|ens|ENST00000300069|gb|AK127873|gb|AK124123 chr15:62819488-62819429 hs|15q22.31 Homo sapiens RNA binding protein with multiple splicing 2 (RBPMS2), mRNA [NM_194272] GO:0000166(nucleotide binding)|GO:0003676(nucleic acid binding) TTATGCATCATAAAGGATTTTTCATGTGCGTACCATTAATTATTAAAGCGACCTCGTTCG
A_23_P100065 A_23_P100065 FALSE NM_001038640 NM_001038640 342096 GOLGA6 golgi autoantigen, golgin subfamily a, 6" Hs.546408 ENST00000300576 THC2651564 ref|NM_001038640|ref|NM_018652|gb|AF263742|ens|ENST00000300576 chr15:72150963-72150824 hs|15q24.1 Homo sapiens golgi autoantigen, golgin subfamily a, 6 (GOLGA6), mRNA [NM_001038640] ATCGTGACAGACGGCATGAGAGAGTCCTTCACCGTATATGAAAGCCAGGGGGCAGTGCCA
A_23_P100074 A_23_P100074 FALSE NM_020371 NM_020371 57099 AVEN apoptosis, caspase activation inhibitor" Hs.555966 ENST00000306730 THC2471512 ref|NM_020371|ens|ENST00000306730|gb|CR618548|gb|CR619789 chr15:31946031-31945972 hs|15q14 Homo sapiens apoptosis, caspase activation inhibitor (AVEN), mRNA [NM_020371] GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0005624(membrane fraction)|GO:0006915(apoptosis)|GO:0006916(anti-apoptosis)|GO:0012505(endomembrane system)|GO:0016020(membrane) GACCAGCCAGTTTACAAGCATGTCTCAAGCTAGTGTGTTCCATTATGCTCACAGCAGTAA
A_23_P100088 A_23_P100088 FALSE NM_002789 NM_002789 5685 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4" Hs.251531 NP705869 ref|NM_002789|ref|NM_001102667|ref|NM_001102668|gb|BC005361 chr15:76628463-76628522 hs|15q25.1 Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 4 (PSMA4), transcript variant 1, mRNA [NM_002789] GO:0004298(threonine-type endopeptidase activity)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0005839(proteasome core complex)|GO:0006511(ubiquitin-dependent protein catabolic process)|GO:0008233(peptidase activity)|GO:0031145(anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process)|GO:0042802(identical protein binding)|GO:0051436(negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle)|GO:0051437(positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle) TGAATTGGGTCCTTGTCATTTCTGTCCAATTGAATACTTTATTGTAACGATGATGGTTAC
A_23_P100092 A_23_P100092 FALSE NM_152455 NM_152455 146050 ZSCAN29 zinc finger and SCAN domain containing 29 Hs.418287 NP1457339 ref|NM_152455|gb|BC109270|gb|AK122788|gb|AK093377 chr15:41440680-41440621 hs|15q15.3 Homo sapiens zinc finger and SCAN domain containing 29 (ZSCAN29), mRNA [NM_152455] GO:0003700(transcription factor activity)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) AGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAA
A_23_P100103 A_23_P100103 FALSE NM_015289 NM_015289 23339 VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) Hs.88025 ENST00000348544 THC2782911 ref|NM_015289|ens|ENST00000348544|ens|ENST00000318006|gb|AF280814 chr15:40240319-40240260 hs|15q15.1 Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39), mRNA [NM_015289] GO:0005083(small GTPase regulator activity)|GO:0005515(protein binding)|GO:0005737(cytoplasm)|GO:0005765(lysosomal membrane)|GO:0005768(endosome)|GO:0015031(protein transport)|GO:0016020(membrane)|GO:0031902(late endosome membrane) TGCATTTGCAAGATACCCCAATGGAGTGGTCGTCCATTACTTCTGTTCCAAAGAGGTAAA
A_23_P100115 A_23_P100115 FALSE NM_007236 NM_007236 11261 CHP calcium binding protein P22 Hs.406234 ENST00000366273 NP1075687 ref|NM_007236|ens|ENST00000366273|ens|ENST00000334660|gb|CR542085 chr15:39358319-39358378 hs|15q15.1 Homo sapiens calcium binding protein P22 (CHP), mRNA [NM_007236] GO:0005509(calcium ion binding)|GO:0005737(cytoplasm)|GO:0006813(potassium ion transport)|GO:0007264(small GTPase mediated signal transduction)|GO:0015459(potassium channel regulator activity)|GO:0043231(intracellular membrane-bounded organelle) GACCATTCAGGAGGCTGATCAGGATGGGGACAGTGCCATATCTTTCACAGAATTTGTTAA
A_23_P100127 A_23_P100127 FALSE NM_170589 NM_170589 57082 CASC5 cancer susceptibility candidate 5 Hs.181855 ENST00000260369 THC2474180 ref|NM_170589|ref|NM_144508|gb|AF248041|ens|ENST00000260369 chr15:38704817-38704876 hs|15q15.1 Homo sapiens cancer susceptibility candidate 5 (CASC5), transcript variant 1, mRNA [NM_170589] GO:0001669(acrosome)|GO:0001675(acrosome formation)|GO:0005515(protein binding)|GO:0005634(nucleus) CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT
A_23_P100133 A_23_P100133 FALSE NM_015251 NM_015251 23300 ATMIN ATM interactor Hs.16349 ENST00000299575 THC2468116 ref|NM_015251|ens|ENST00000299575|gb|AB007891|gb|CR749457 chr16:79636596-79636655 hs|16q23.2 Homo sapiens ATM interactor (ATMIN), mRNA [NM_015251] GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006974(response to DNA damage stimulus)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) TGGACCTTCGTCAGCTTTGACACCTCTTTTCTGATTTAAAGACACCAAGGAAAACTACAA
A_23_P100141 A_23_P100141 FALSE NM_023076 NM_023076 64718 UNKL unkempt homolog (Drosophila)-like Hs.643536 ENST00000402641 THC2474748 ref|NM_023076|gb|AK022685|gb|AK027013|ens|ENST00000402641 chr16:1355346-1355287 hs|16p13.3 Homo sapiens unkempt homolog (Drosophila)-like (UNKL), transcript variant 1, mRNA [NM_023076] GO:0003676(nucleic acid binding)|GO:0005515(protein binding)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) AGCAGAGGGGATCCAACGTCAGAGCTTTTAGAATTACTTTTTTAAGCAGCTGTCTTCTGG
A_23_P100155 A_23_P100155 FALSE NM_017849 NM_017849 55654 TMEM127 transmembrane protein 127 Hs.355708 ENST00000258439 THC2466683 ref|NM_017849|gb|BC028575|ens|ENST00000258439|gb|AK025910 chr2:96281851-96281792 hs|2q11.2 Homo sapiens transmembrane protein 127 (TMEM127), mRNA [NM_017849] GO:0016020(membrane)|GO:0016021(integral to membrane) AACCTGTCCTTGTTAAGTTACTTGCTTCTTGGGAATCAGTGTCCCCTGCTGAGCTGAAAA
A_23_P100177 A_23_P100177 FALSE NM_002428 NM_002428 4324 MMP15 matrix metallopeptidase 15 (membrane-inserted) Hs.80343 ENST00000219271 THC2739464 ref|NM_002428|gb|BC036495|ens|ENST00000219271|gb|CR596713 chr16:56637027-56637086 hs|16q13 Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15), mRNA [NM_002428] GO:0004222(metalloendopeptidase activity)|GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0005578(proteinaceous extracellular matrix)|GO:0005887(integral to plasma membrane)|GO:0006464(protein modification process)|GO:0006508(proteolysis)|GO:0008047(enzyme activator activity)|GO:0008152(metabolic process)|GO:0008233(peptidase activity)|GO:0008270(zinc ion binding)|GO:0016020(membrane) GACCATTTGTTTCTGTTTCCCCGACTGGGGCAGGGTGTTTAGAATTTTCTAAATGTAGTT
A_23_P100189 A_23_P100189 FALSE NM_002761 NM_002761 5619 PRM1 protamine 1 Hs.2909 ENST00000312511 THC2462590 ref|NM_002761|ens|ENST00000312511|gb|CR612045|gb|Y00443 chr16:11282363-11282304 hs|16p13.13 Homo sapiens protamine 1 (PRM1), mRNA [NM_002761] GO:0000786(nucleosome)|GO:0003677(DNA binding)|GO:0005634(nucleus)|GO:0005654(nucleoplasm)|GO:0005694(chromosome)|GO:0006323(DNA packaging)|GO:0006997(nucleus organization)|GO:0007076(mitotic chromosome condensation)|GO:0007275(multicellular organismal development)|GO:0007283(spermatogenesis)|GO:0007286(spermatid development)|GO:0030154(cell differentiation) GTAGAAGACACTAATTGCACAAAATAGCACATCCACCAAACTCCTGCCTGAGAATGTTAC
A_23_P100196 A_23_P100196 FALSE NM_005153 NM_005153 9100 USP10 ubiquitin specific peptidase 10 Hs.136778 ENST00000219473 THC2470177 ref|NM_005153|gb|CR749515|ens|ENST00000219473|gb|BC000263 chr16:83370332-83370391 hs|16q24.1 Homo sapiens ubiquitin specific peptidase 10 (USP10), mRNA [NM_005153] GO:0004221(ubiquitin thiolesterase activity)|GO:0006511(ubiquitin-dependent protein catabolic process)|GO:0008233(peptidase activity)|GO:0008234(cysteine-type peptidase activity) TTGGGGTTCGTGCACAACACAGCTTCTGTTGACTCTAACTTCCAAATCAAAATCATTTGG
A_23_P100203 A_23_P100203 FALSE NM_001537 NM_001537 3281 HSBP1 heat shock factor binding protein 1 Hs.250899 THC2465419 ref|NM_001537|gb|CR626052|gb|CR608180|gb|CR623333 chr16:82403745-82403804 hs|16q23.3 Homo sapiens heat shock factor binding protein 1 (HSBP1), mRNA [NM_001537] GO:0000122(negative regulation of transcription from RNA polymerase II promoter)|GO:0003714(transcription corepressor activity)|GO:0005634(nucleus) ACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCAC

Total number of rows: 17148

Table truncated, full table size 10382 Kbytes.




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