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Sample GSM377113 Query DataSets for GSM377113
Status Public on Mar 24, 2009
Title 367T (expression)
Sample type RNA
 
Channel 1
Source name endometrial cancer
Organism Homo sapiens
Characteristics gender: F
histologic type: non-endometrioid
metastatic phenotype: FIGO III/IV or recurrence
Extracted molecule total RNA
Extraction protocol RNA was isolated from tissue or cell pellets using Rneasy kit (Qiagen).
Label Cy3
Label protocol Per manufacturer's instructions
 
Channel 2
Source name Stratagene Universal RNA
Organism Homo sapiens
Characteristics gender: F
histologic type: non-endometrioid
metastatic phenotype: FIGO III/IV or recurrence
Extracted molecule total RNA
Extraction protocol RNA was isolated from tissue or cell pellets using Rneasy kit (Qiagen).
Label Cy5
Label protocol Per manufacturer's instructions
 
 
Hybridization protocol Per manufacturer's instructions
Scan protocol Agilent Microarray Scanner Bundle
Description n/a
Data processing Signal intensities were determined using J-express, filtered to remove genes with low signal intensity, batch corrected, and mean-centered across the tumor set.
 
Submission date Mar 03, 2009
Last update date Mar 23, 2009
Contact name Rameen Beroukhim
Organization name Dana-Farber Cancer Institute
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL7264
Series (1)
GSE14860 Integrated genomic profiling of endometrial carcinoma

Data table header descriptions
ID_REF
VALUE mean centered log2 test/reference

Data table
ID_REF VALUE
A_23_P146576 -1.81788063
A_23_P125016 0.127159372
A_23_P28555 0.064220332
A_23_P23227 -0.328378171
A_23_P137543 -0.217694148
A_23_P27247 -0.202422529
A_23_P258433 -1.254951596
A_23_P28649 0.336069673
A_23_P96529 -0.369295835
A_23_P2322 -0.440997213
A_23_P203419 -0.80723387
A_23_P122674 0.810891509
A_23_P250800 -0.657787204
A_23_P23611 -0.31368807
A_23_P68884 0.040690783
A_23_P111402 -2.671603918
A_23_P136095 -1.57452023
A_23_P81867 0.42687574
A_23_P165457 0.292018682
A_23_P72372 -0.149497688

Total number of rows: 17086

Table truncated, full table size 414 Kbytes.




Supplementary file Size Download File type/resource
GSM377113_US22502545_251209729456_S02.txt.gz 5.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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