|
| Status |
Public on Jun 27, 2019 |
| Title |
Ctrl1_d22 |
| Sample type |
SRA |
| |
|
| Source name |
VA10, a bronchial epithelial cell line
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: VA10
cell type: bronchial epithelial cell line
passages: 21
time point (days): 22
|
| Treatment protocol |
Medium replaced 3x/week with addition of AZM or ethanol control.
|
| Growth protocol |
Cells cultured in Transwell filter inserts with DMEM/F12 supplemented with 2%UltroserG
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extracted with standard Trizol protocol.
Libraries were prepared according to Illumina's instructions for HiSeq 2500
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Kallisto v0.43
Sleuth
Genome_build: Ensembl 83
Supplementary_files_format_and_content: Kallist h5 or tsv abundance measurements
|
| |
|
| Submission date |
Mar 19, 2019 |
| Last update date |
Jun 27, 2019 |
| Contact name |
Zuzana Budkova |
| Organization name |
University of Iceland
|
| Department |
BioMedical Center, School of Health Sciences
|
| Lab |
Stem Cell Research Unit
|
| Street address |
Vatnsmyrarvegi 14
|
| City |
Reykjavik |
| ZIP/Postal code |
101 |
| Country |
Iceland |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE128523 |
Azithromycin induces epidermal differentiation and multivesicular bodies in airway epithelia |
|
| Relations |
| BioSample |
SAMN11166116 |
| SRA |
SRX5542809 |
