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Sample GSM313204 Query DataSets for GSM313204
Status Public on Dec 31, 2008
Title FoxO4 RNAi in C2C12 cells
Sample type RNA
 
Source name C2C12 cells
Organism Mus musculus
Characteristics C2C12 cells were transfected with shRNA against FoxO4.
Biomaterial provider Tjian lab
Treatment protocol C2C12 cells were transfected with shRNA against FoxO4. Different colonies were screened for the best depletion of FoxO4.
Growth protocol C2C12 cells were grown in DMEM with puromycine. All serums used were tested for cytotoxicity.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit was used to extract total RNA.
Label Biotin
Label protocol Follow the protocol from Affymetrix.
 
Hybridization protocol Follow the protocol from Affymetrix.
Scan protocol Follow the protocol from Affymetrix.
Description C2C12 cells grown in DMEM transfected with FoxO4 shRNA.
Data processing Using Affymetrix GeneChip GCOS expression analysis software to process.
 
Submission date Aug 15, 2008
Last update date Aug 28, 2018
Contact name Ping Hu
E-mail(s) [email protected]
Organization name University of California, Berkeley
Department MCB
Lab Tjian
Street address Hearst & Oxford
City Berkeley
State/province CA
ZIP/Postal code 94564
Country USA
 
Platform ID GPL1261
Series (1)
GSE13347 FoxO RNAi in C2C12 cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if a given transcript is detected (present), ont detected (absent), or marginally detected (marginal).
DETECTION P-VALUE A p-value indicating the significance of the detection call. A detection p-value measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, and that the target is likely to be present

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-Ec-bioD-3_at 228033.9 P 0.000244
AFFX-r2-Ec-bioC-5_at 33571.7 P 0.001953
AFFX-r2-Ec-bioB-5_at 10063 P 0.00415
AFFX-r2-Ec-bioB-3_at 13084.3 P 0.000244
AFFX-MURINE_b1_at 11354.1 P 0.000239
AFFX-GapdhMur/M32599_M_at 66501.7 P 0.00007
AFFX-GapdhMur/M32599_5_at 40457.6 P 0.000044
AFFX-GapdhMur/M32599_3_at 90185.3 P 0.000044
AFFX-DapX-M_at 103.9 A 0.672935
AFFX-BioDn-5_at 50867.2 P 0.000044
AFFX-BioDn-3_at 149925.6 P 0.000044
AFFX-BioC-5_at 24438.3 P 0.000044
AFFX-BioC-3_at 32706.1 P 0.000044
AFFX-BioB-M_at 8771.6 P 0.000258
AFFX-BioB-5_at 5560.3 P 0.00007
AFFX-BioB-3_at 7315.1 P 0.000052
1460711_at 2376.2 P 0.008057
1460708_s_at 8544.1 P 0.000244
1460707_at 3195.2 P 0.01001
1460703_at 735.4 A 0.5

Total number of rows: 45101

Table truncated, full table size 1233 Kbytes.




Supplementary file Size Download File type/resource
GSM313204.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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