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Sample GSM2928233 Query DataSets for GSM2928233
Status Public on Jan 11, 2018
Title CE68
Sample type RNA
 
Source name primary desmoid tumor
Organism Homo sapiens
Characteristics ctnnb1 mutational status: T41A
tissue: primary desmoid tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN FFPE RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol RNA from each sample was labeled according to the manufacturers recommendations (Illumina WG-DASL Expression Profiling Assay Guide).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 9389333008_K
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software v3.8
 
Submission date Jan 10, 2018
Last update date Jan 11, 2018
Contact name Loris De Cecco
E-mail(s) [email protected]
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE109023 Beta-catenin in Desmoid Tumors: the role of T41A and S45F mutations on gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 67.74686 0.1344828
ILMN_2055271 867.8652 0
ILMN_2383229 101.3948 0.05862069
ILMN_1806310 60.06647 0.2241379
ILMN_1779670 46.61307 0.4827586
ILMN_1717783 71.47456 0.1137931
ILMN_1814316 2754.278 0
ILMN_2359168 2601.447 0
ILMN_1731507 54.40985 0.2896552
ILMN_1787689 51.96593 0.3344828
ILMN_3241953 54.87959 0.2896552
ILMN_1745607 4670.446 0
ILMN_2136495 362.321 0
ILMN_1668111 111.4518 0.05172414
ILMN_2295559 76.40833 0.08965518
ILMN_1735045 1563.022 0
ILMN_1680754 78.43539 0.07931034
ILMN_2375184 94.73499 0.06206897
ILMN_1659452 110.8648 0.05172414
ILMN_1767388 1417.132 0

Total number of rows: 29377

Table truncated, full table size 806 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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