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Sample GSM2928228 Query DataSets for GSM2928228
Status Public on Jan 11, 2018
Title CE59
Sample type RNA
 
Source name primary desmoid tumor
Organism Homo sapiens
Characteristics ctnnb1 mutational status: WT
tissue: primary desmoid tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN FFPE RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol RNA from each sample was labeled according to the manufacturers recommendations (Illumina WG-DASL Expression Profiling Assay Guide).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 9389333008_B
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software v3.8
 
Submission date Jan 10, 2018
Last update date Jan 11, 2018
Contact name Loris De Cecco
E-mail(s) [email protected]
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE109023 Beta-catenin in Desmoid Tumors: the role of T41A and S45F mutations on gene expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 46.42655 0.6827586
ILMN_2055271 606.5967 0
ILMN_2383229 46.87516 0.6689655
ILMN_1806310 56.58818 0.437931
ILMN_1779670 40.09426 0.8517241
ILMN_1717783 91.79196 0.09655172
ILMN_1814316 1587.773 0
ILMN_2359168 1605.119 0
ILMN_1731507 210.4008 0.003448276
ILMN_1787689 64.71667 0.2793103
ILMN_3241953 45.49297 0.7103449
ILMN_1745607 5013.973 0
ILMN_2136495 69.0669 0.2413793
ILMN_1668111 50.41155 0.5758621
ILMN_2295559 53.91053 0.4931034
ILMN_1735045 795.6041 0
ILMN_1680754 111.0557 0.04482759
ILMN_2375184 73.32571 0.2103448
ILMN_1659452 96.7802 0.08275862
ILMN_1767388 134.5886 0.02413793

Total number of rows: 29377

Table truncated, full table size 805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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