|
| Status |
Public on Feb 20, 2019 |
| Title |
CD_involved_1 |
| Sample type |
RNA |
| |
|
| Source name |
Crohn’s disease involved
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: CD
individual id: 1
site: involved
tissue: intestinal tissue
|
| Treatment protocol |
N/A
|
| Growth protocol |
N/A
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Standard Allprep RNA/DNA FFPE kit protocol
|
| Label |
biotin
|
| Label protocol |
Total RNA was labled with the WG-DASL pre 1 MCS4 w/UDG Kit according to manufacturers suggested protocols.
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
SAMPLE 1
|
| Data processing |
A single intensity (expression) value for each Illumina probe on the array was obtained using Illumina BeadStudio software with standard settings and no background correction. The expression values for all the probes for each sample were scaled to have median 256 (28) and then log (base 2) transformed before performing statistical analysis.
|
| |
|
| Submission date |
Feb 20, 2017 |
| Last update date |
Feb 20, 2019 |
| Contact name |
Xinmei Zhao |
| E-mail(s) |
[email protected]
|
| Phone |
+8662787934
|
| Organization name |
Nanfang Hospital, Southern Medical University
|
| Street address |
No 1838 Guangzhou North Avenue
|
| City |
Guangzhou |
| ZIP/Postal code |
510515 |
| Country |
China |
| |
|
| Platform ID |
GPL14951 |
| Series (1) |
| GSE95095 |
Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profile |
|
