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Sample GSM2424341 Query DataSets for GSM2424341
Status Public on Feb 06, 2017
Title TrspFF hypothlamus 2
Sample type RNA
 
Source name Hypothlamus_TrspFF
Organism Mus musculus
Characteristics strain background: C57BL/6J
gender: Male
age: 16 weeks
genotype/variation: TrspFlox/Flox (TrspFF)
tissue: Hypothlamus
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Sepazol-RNA I Super G RNA solution (Nakalai Tesque).
Label Cy3
Label protocol RNA samples were labeled with Cy3 using theLow Input Quick Amp Labeling Kits (Agilent) according to the manufacturer's protocol.
 
Hybridization protocol Cy3-labeled cRNA were mixed and fragmented using the Agilent In Situ Hybridization Kit protocol. Hybridizations were performed for 16 hours according to the Agilent 60-mer oligo microarray processing protocol prior to washing.
Scan protocol Slides were scanned with an Agilent DNA Microarray Scanner.
Data processing The data were normalized by percentile shift and filtered by flag, using GeneSpring GX software (Silicon Genetics).
 
Submission date Dec 11, 2016
Last update date Feb 06, 2017
Contact name Akira Uruno
E-mail(s) [email protected]
Phone 81-22-717-8085
Organization name Tohoku University Graduate School of Medicine
Street address 2-1 Seiryo-cho, Aoba-ku
City Sendai
State/province Miyagi
ZIP/Postal code 980-8575
Country Japan
 
Platform ID GPL11202
Series (2)
GSE92235 Hypothalamic oxidative stress provokes leptin and insulin resistance [hypothlamus]
GSE92236 Hypothalamic oxidative stress provokes leptin and insulin resistance

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
GE_BrightCorner 0.3167081
DarkCorner -0.011797905
A_55_P1989846 0.005423069
A_55_P1991598 -0.15929794
A_55_P2022211 0.17831707
A_55_P1980764 0.33037853
A_55_P1964375 0.006546021
A_51_P128876 -0.4804058
A_55_P2121042 -0.12853909
A_52_P219230 0.47319221
A_51_P207591 1.6274948
A_55_P2131920 0.15719938
A_55_P2404223 -0.038970947
A_55_P2101944 0.2945714
A_52_P358860 0.022497177
A_51_P119031 -0.121008396
A_51_P309854 -0.33821917
A_51_P343900 -0.06598902
A_51_P234359 -0.3282156
A_51_P487813 -0.16857576

Total number of rows: 39485

Table truncated, full table size 972 Kbytes.




Supplementary file Size Download File type/resource
GSM2424341_2_TrspFF_hypothlamus_2.txt.gz 2.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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