|
| Status |
Public on Sep 27, 2016 |
| Title |
Overexpressed DIS3L2 D391N mutant rep1 (CLIP-Seq) |
| Sample type |
SRA |
| |
|
| Source name |
HEK293
|
| Organism |
Homo sapiens |
| Characteristics |
condition: Overexpressed DIS3L2 D391N mutant
cell line: HEK293
|
| Extracted molecule |
total RNA |
| Extraction protocol |
crosslinking in vivo and immunoprecipitation (CLIP) method
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Library strategy: CLIP-Seq
alignment: Segemehl, Subread
analysis: Bayesian background analysis
Genome_build: hg19
Supplementary_files_format_and_content: Count table of uridylated regions
|
| |
|
| Submission date |
May 17, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Josef Pasulka |
| E-mail(s) |
[email protected]
|
| Organization name |
Institute of Molecular Genetics of the ASCR, v. v. i.
|
| Lab |
Laboratory of Epigenetic Regulations
|
| Street address |
Vídeňská 1083
|
| City |
Prague 4 |
| ZIP/Postal code |
142 20 |
| Country |
Czech Republic |
| |
|
| Platform ID |
GPL11154 |
| Series (2) |
| GSE81536 |
Uridylation-mediated RNA quality control pathway in mammalian cytoplasm [CLIP-Seq] |
| GSE81537 |
TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs. |
|
| Relations |
| BioSample |
SAMN05005167 |
| SRA |
SRX1770414 |
