GSE18927 |
University of Washington Human Reference Epigenome Mapping Project |
GSE24565 |
Small RNA-seq from ENCODE/Cold Spring Harbor Lab |
GSE25882 |
Genome-wide maps of chromatin state in NCCIT cells |
GSE26284 |
ENCODE Cold Spring Harbor Labs Long RNA-seq |
GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
GSE27452 |
Genome-wide maps of polyadenylation sites in control and PABPN1kd cells |
GSE28115 |
CBX3 Regulates Efficient RNA Processing Genome Wide |
GSE28332 |
The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites |
GSE29069 |
Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer |
GSE29120 |
Bisulfite sequencing of ChIP DNA on breast cancer cells (HCC1954) |
GSE29127 |
Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC) |
GSE29181 |
Core transcriptional regulatory circuit controlled by the TAL1 complex in human T-cell acute lymphoblastic leukemia |
GSE29195 |
Genome-wide location analysis of WNT (Tcf7l2) and BMP (SMAD1) in human hematopoeitic cell lines co-occupied with lineage specific regulators (GATA1, GATA2, CEBPA) |
GSE29196 |
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration |
GSE29282 |
A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE29714 |
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3' UTRs and Near Stop Codons |
GSE29943 |
Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIP |
GSE30017 |
Widespread regulated alternative splicing of single codons accelerates proteome evolution |
GSE30567 |
ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19) |
GSE30611 |
[E-MTAB-513] Illumina Human Body Map 2.0 Project |
GSE31263 |
The DNA methylomes of a newborn and a centenarian |
GSE31982 |
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay |
GSE32185 |
Human mitochondria hub of small RNAs: Analysis by deep Sequencing |
GSE32213 |
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin hubs |
GSE32260 |
Relationship between DNMT1-RNA interactions, DNA methylation and gene expression |
GSE32268 |
Role of DNMT3B in the regulation of early neural and neural crest specifiers |
GSE32303 |
PABPN1 role in regulation of alternative cleavage and polyadenylation |
GSE32307 |
Transposon-based construction of strand-specific RNA-seq libraries |
GSE32340 |
Reorganization of the host epigenome by a viral oncogene |
GSE32625 |
RNA-Seq of human neurons derived from iPS cells Reveals candidate long non-coding RNAs Involved in neurogenesis and neuropsychiatric disorders. |
GSE32677 |
Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization |
GSE33092 |
Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq] |
GSE33129 |
Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster (MeDIP-Seq) |
GSE33130 |
Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster |
GSE33216 |
Genome-wide maps of H3K4me2 and DNase I hypersensitivity sites in prostate cancer cell line LNCaP and breast cancer cell line MCF-7. |
GSE33281 |
Bromodomain-Containing-Protein 4 (BRD4) Regulates RNA Polymerase II Serine 2 Phosphorylation in Human CD4+ T Cells |
GSE33367 |
Systematic dissection of regulatory motifs in 2,000 predicted human enhancers using a massively parallel reporter assay |
GSE33592 |
Wide-scale analysis of alternative polyadenylation (APA) associated with proliferation and transformation using 3'-Seq |
GSE33600 |
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS |
GSE33632 |
Genome-wide analysis of histone eviction by FAIRE-Seq |
GSE33634 |
Topoisomerase II inhibitors and histone eviction |
GSE33850 |
Core transcriptional regulatory circuit controlled by the tal1 complex in human t-cell acute lymphoblastic leukemia (Subseries) |
GSE33889 |
Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion. |
GSE33912 |
Functional Identification of Critical Bmi1 target genes in Neural Progenitor and Malignant Glioma cells |
GSE33966 |
Deep sequencing analysis of small non-coding RNAs reveals the diversity of microRNAs and piRNAs in the human epididymis. |
GSE34061 |
Progressive degeneration of human neural stem cells caused by pathogenic LRRK2 |
GSE34316 |
Genome-wide Detection of Genes Targeted by Aberrant Somatic Hypermutation in Lymphoma |
GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
GSE34491 |
Nuclear Matrix Factor hnRNP U/SAF-A Exerts a Global Control of Alternative Splicing by Regulating U2 snRNP Maturation |
GSE34740 |
K562 polyA RNA-Seq |
GSE34774 |
PCGF Homologs and RYBP Define Functionally Distinct PRC1 Family Complexes |
GSE34941 |
Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia |
GSE34995 |
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins (RNA-Seq) |
GSE34996 |
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins |
GSE35126 |
Effects of Cardiac Glycosides on RNA Expression in Prostate Cancer LNCaP-abl Cells |
GSE35156 |
Conserved Topological Domains in Mammalian Genomes Identified by High-resolution Analysis of Chromatin Interactions |
GSE35268 |
Analysis of global gene expression profiles of hPAF1 deficient A549 cells |
GSE35339 |
ATRX-mediated chromatin association of histone variant macroH2A1 regulates alpha globin gene expression |
GSE35375 |
Epigenetic modifications and chromosome conformations of the beta globin locus throughout development |
GSE35462 |
Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses (ChIP-Seq dataset) |
GSE35464 |
Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses (DGE dataset) |
GSE35465 |
Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses |
GSE35468 |
Transcriptome profiling of epidermal differentiation |
GSE35774 |
Suppression of the antiviral response by an influenza "histone mimic" |
GSE35791 |
Analysis of H3K79 methylation during reprogramming |
GSE35964 |
Tumor suppressor REST/NRSF controls genome stability by preventing R-loop formation |
GSE36134 |
Genome-wide maps of chromatin remodeler SNF5 in human pluripotent cells. |
GSE36140 |
SNF5 is an essential executor of epigenetic regulation in pluripotency and differentiation |
GSE36173 |
Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome |
GSE36185 |
mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription |
GSE36354 |
Transcriptional Amplification in Tumor Cells with Elevated c-Myc |
GSE36526 |
Hes6 drives a network with therapeutic potential in castrate-resistant prostate cancer |
GSE36552 |
Tracing pluripotency of human early embryos and embryonic stem cells by single cell RNA-seq |
GSE36597 |
SOX2 gene regulates the transcriptional network of oncogenes and affects tumorigenesis of human lung cancer cells |
GSE36616 |
Lamin B1 depletion in senescent cells triggers large-Scale changes in gene expression and in the chromatin landscape[ChIP-seq] |
GSE36641 |
Lamin B1 depletion in senescent cells leads to large-scale changes in the chromatin landscape |
GSE36695 |
Comparison of stem-cell derived retinal pigment epithelia (RPE) with human fetal retina pigment epithelium |
GSE36835 |
FOXO3 regulates gene expression from distal enhancers |
GSE36952 |
Transcriptome wide analysis of classically and alternatively activated macrophages |
GSE36979 |
Genome-wide maps of nucleosome occupancy in human lymphoblastoid cell lines |
GSE36985 |
Comparative profiling of chromatin state maps and transcription factor occupancy during human fetal and adult erythropoiesis |
GSE36994 |
Comparative profiling of human fetal and adult erythropoiesis |
GSE37037 |
Genome‐wide analysis of pre‐mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length: A-seq |
GSE37050 |
5-hydroxymethylcytosine-mediated epigenetic modifications between iPSCs and hESCs |
GSE37169 |
Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration |
GSE37211 |
DPN and Tamoxifen treatments of parathyroid adenoma cells |
GSE37401 |
Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length |
GSE37454 |
Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in Acute Myeloid Leukemia |
GSE37524 |
Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data |
GSE37578 |
Epigenetic alterations of a DNMT3B-mutant ICF patient at base-pair resolution |
GSE37592 |
[E-MTAB-935] GENCODE PCR-Seq Batch VII |
GSE37686 |
Identification of miRNA signatures during the differentiation of hESCs into retinal pigment epithelial cells |
GSE37703 |
Differential analysis of HOXA1 in adult cells at isoform resolution by RNA-Seq [Illumina] |
GSE37704 |
Differential analysis of gene regulation at transcript resolution by RNA-Seq |
GSE37710 |
MiR-27a-3p in peripheral blood mononuclear cells as a potential marker for pancreatic cancer screening |
GSE37744 |
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments |
GSE37769 |
mRNA profiling of THP1 cell line |
GSE37770 |
smallRNA profiling of THP1 cell line |
GSE37771 |
miRNA sensor and decoy libraries permit high-throughput assessment of miRNA activity and function |
GSE37858 |
A Random-Forest Based Algorithm for Prediction of Enhancers From Histone Modifications |
GSE37916 |
FAIRE-seq in primary human megakaryocytes, erythroblasts and monocytes |
GSE37918 |
RNA-seq in breast cancer cell lines after manipulation of miR-23b expression |
GSE38140 |
GRO-seq from HCT116 cells |
GSE38157 |
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts |
GSE38184 |
Genome-wide mapping of H3K27me3 in Daxx-depleted cells |
GSE38201 |
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts [PAR-CLIP] |
GSE38233 |
Study functions of ADAR proteins using next generation sequencing of genome and transcriptome |
GSE38234 |
Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of binding sites in a cell type-specific manner |
GSE38258 |
CDK8 ChIP-seq from HCT116 cells in normoxia and hypoxia |
GSE38265 |
mRNA expression in iPS cells generated by a synthetic self-replicative RNA |
GSE38273 |
ChIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells |
GSE38274 |
RIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells |
GSE38275 |
ChIP-seq and RIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells |
GSE38355 |
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts [protein occupancy profiling] |
GSE38393 |
Hi-seq 2000 sequencing facilitates quantitative analysis of transcriptomes in LNCaP cells with or without SiGATA2 treatment. |
GSE38403 |
Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia [ChIP-seq] |
GSE38442 |
Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation (ChIP-Seq) |
GSE38447 |
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3 |
GSE38448 |
Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation |
GSE38452 |
A Class of H3K4me1/H3K9me2 marked active GATA2 enhancers directs a GATA2-dependent transcription program underlying prostate cancer progression. |
GSE38541 |
Human PA-1 cells treated with scrambled or specific ASOs |
GSE38567 |
Genome-wide profiling of target genes for the systemic lupus erythematosus-associated transcription factors IRF5 and STAT4 |
GSE38629 |
H3K27me3 in four squamous cell carcinoma cell lines |
GSE38679 |
DNA Methylation in IMR90 cells |
GSE38682 |
H3K4me3 Marks in Normal and Cancerous Prostate Cells |
GSE38684 |
Chromatin Looping of Normal and Cancerous Prostate Cells |
GSE38685 |
Normal and Cancerous Prostate Cells |
GSE38770 |
Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells [RNA-Seq] |
GSE38771 |
Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells |
GSE38794 |
SINE transcription by RNA polymerase III is suppressed by histone methylation but not DNA methylation |
GSE38901 |
HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers [ChIP-Seq] |
GSE38912 |
HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers |
GSE38945 |
Gene expression of three hepatocellular carcinoma cell lines with different organ-tropism. |
GSE38957 |
Identification of direct targets and modified bases of RNA cytosine methyltransferases |
GSE39003 |
Small RNAs expression of three hepatocellular carcinoma cell lines with different organ-tropism. |
GSE39053 |
Expression of three hepatocellular carcinoma cell lines with different organ-tropism |
GSE39081 |
Genetically-driven target tissue over-expression of CD40: A novel mechanism in autoimmune disease |
GSE39086 |
DGCR8 HITS-CLIP reveals novel functions for the Microprocessor (CLIP-seq) |
GSE39118 |
RNA-Seq and expression data from human adipose tissue |
GSE39121 |
Lung adenocarcinoma metastasis is suppressed by the alveolar lineage transcription factors GATA6 and HOPX. |
GSE39167 |
Investigating the genetic basis of RNA Editing in humans |
GSE39179 |
TAL1 complex in human T-cell acute lymphoblastic leukemia (RPMI-8402) |
GSE39187 |
Embedding siRNA sequences targeting Apolipoprotein B100 in shRNA and miRNA scaffolds results in differential processing and in vivo efficacy |
GSE39263 |
Modulation of gene expression by ZNF143, THAP11 and NOTCH1 via overlapping binding sites in mammalian cells |
GSE39436 |
MicroRNA profiling and discovery by deep sequencing cord blood from Down syndrome fetuses |
GSE39459 |
Genome-wide maps of PRC2 complex components and chromatin states in prostate cancer cell lines |
GSE39461 |
Role of PRC2 complex components in prostate cancer cell lines |
GSE39467 |
Profiling the target genes for MTA2 and EZH2 in HCT116 |
GSE39682 |
FMR1 targets distinct mRNA sequence elements to regulate protein expression [PAR-CLIP] |
GSE39686 |
FMR1 targets distinct mRNA sequence elements to regulate protein expression |
GSE39748 |
Argonaute proteins couple chromatin silencing to alternative splicing (RNA IP-Seq) |
GSE39749 |
Argonaute proteins couple chromatin silencing to alternative splicing |
GSE39757 |
Transcriptomic analysis of XIST+ and XIST- hES cells |
GSE39775 |
Examination of four human tissue samples by MethylC-seq |
GSE39776 |
Examination of gene expression in human placenta using RNA-seq |
GSE39777 |
Comparison of DNA methylation in human tissues |
GSE39787 |
Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique. |
GSE39821 |
RNA-Seq of cKIT+ sorted cells from 16-16.5 week old fetal testes and ovaries and RNA-Seq of TRA-1-60+ H1 hESCs |
GSE39841 |
YM500: An integrative small RNA sequencing (smRNA-seq) database for microRNA research |
GSE39878 |
RNA-DNA DIFFERENCES IN NASCENT RNA |
GSE39912 |
Genome Wide Profiling of p53 Response to Differentiation or DNA Damage of Human Embryonic Stem Cells |
GSE39998 |
NKX2-1 occupancy in human lung adenocarcinoma cell lines |
GSE40050 |
Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions |
GSE40111 |
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation (RNA-seq data) |
GSE40112 |
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation |
GSE40114 |
Histone acetylation regulates intracellular pH |
GSE40132 |
ALKBH5 is a New Mammalian RNA Demethylase |
GSE40137 |
Cleavage Factor Im as a key regulator of 3’ UTR length |
GSE40178 |
Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs (Bisulfite-Seq) |
GSE40196 |
Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs |
GSE40199 |
Whole Genome sequencing of a normal karyotype AML cell line |
GSE40218 |
Gene Expression Changes in a Tumor Xenograft by a Py-Im Polyamide |
GSE40228 |
mRNA profiles following TUT knock-down in HeLa |
GSE40236 |
Small RNA and mRNA profiles following TUT knock-down in HeLa |
GSE40243 |
Hydroxymethylation at gene regulatory regions directs stem cell commitment during erythropoiesis |
GSE40291 |
Efficient direct reprogramming of c-Kit− mature amniotic cells into endothelial cells by ETS factors and TGFβ suppression |
GSE40372 |
Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells |
GSE40419 |
The transcriptional landscape and mutational profile of lung adenocarcinoma |
GSE40429 |
96 mRRBS libraries: Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA |
GSE40465 |
Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain |
GSE40473 |
Selective lymphoma cell killing by a PRC2 small molecule inhibitor (ChIP-Seq set 2) |
GSE40475 |
Selective lymphoma cell killing by a PRC2 small molecule inhibitor (RNA-Seq) |
GSE40476 |
Selective lymphoma cell killing by a PRC2 small molecule inhibitor |
GSE40524 |
Unprecedented alternative splicing and 3 Mb of novel transcribed sequence leads to significant transcript diversity in the transcriptome of the human retina |
GSE40536 |
Genome-wide profiling of Argonaute-chromosome interactions [ChIP-Seq] |
GSE40539 |
Genome-wide DNA hydroxymethylation changes are associated with neurodevelopmental genes in the developing human brain |
GSE40548 |
RNAseq analysis of the human neutrophil transcriptome, with and without in vitro cytokine stimulation |
GSE40632 |
Genome-wide analysis of the Integrator complex (HTS) |
GSE40651 |
Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs (CLIP-Seq) |
GSE40653 |
Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs |
GSE40665 |
Integrative Analyses of Gene Expression and DNA Methylation Profiles in a Breast Cancer Cell Line Model of Tamoxifen-Resistance Indicate a Crucial Role of Cells with Stem-like Properties |
GSE40673 |
An allele-aware approach identifies altered nuclear associations of the contracted D4Z4 array at the FSHD locus |
GSE40705 |
Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples |
GSE40710 |
aSyn polyA-RNAseq in PD and unaffected cortical brain samples |
GSE40739 |
Genome-wide quantitative enhancer activity maps identified by STARR-seq |
GSE40762 |
Genome-wide mapping of FOXM1 binding reveals co-binding with oestrogen receptor alpha in breast cancer cells (ChIP-seq) |
GSE40767 |
Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells |
GSE40770 |
Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules |
GSE40778 |
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex |
GSE40783 |
Revisiting Global Gene Expression Analysis (RNA-Seq) |
GSE40784 |
Revisiting Global Gene Expression Analysis |
GSE40819 |
Differences in miRNA Detection Levels are Technology and Sequence Dependent [NGS] |
GSE40820 |
Differences in miRNA Detection Levels are Technology and Sequence Dependent |
GSE40859 |
Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation |
GSE40867 |
Global mapping of estrogen receptor and histone modifications in breast tumor samples uncovers distinct patterns for aromatase inhibitor resistance |
GSE40953 |
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation [DGE] |
GSE41000 |
SIRT3 functions in the nucleus in the control of stress-related gene expression. |
GSE41009 |
Divergent transcription of lncRNA/mRNA gene pairs in embryonic stem cells |
GSE41069 |
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation [HMST-Seq] |
GSE41070 |
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation [MeDIP_hMeDIP] |
GSE41071 |
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation |
GSE41105 |
cMyc and Max ChIP-seq analysis in small cell lung carcinoma cells |
GSE41111 |
Transcriptional state during endodermal differentiation |
GSE41154 |
The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus |
GSE41166 |
A dynamic H3K27ac signature defines VEGF-regulated endothelial enhancers |
GSE41279 |
RNA-seq HL60 cells |
GSE41324 |
Signaling Pathways Deferentially Affect RNA Polymerase II Initiation, Pausing, and Elongation in Human Cells: Estrogen dependent signaling in MCF-7 cells |
GSE41479 |
Sorafenib inhibits epithelial-mesenchymal transition through an epigenetic-based mechanism in human lung epithelial cells |
GSE41561 |
A novel proteomic approach reveals GREB1 as an Estrogen Receptor co-factor |
GSE41586 |
Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq] |
GSE41588 |
Expression data for HT29 cells treated with 5-aza-deoxy-cytidine |
GSE41616 |
Identification of Novel Molecular Markers through Transcriptomic Analysis in Human Fetal and Adult Corneal Endothelial Cells |
GSE41701 |
Epigenomic alterations in localized and advanced prostate cancer |
GSE41716 |
Somatic copy-number mosaicism in human skin revealed by induced pluripotent stem cells (sequencing) |
GSE41761 |
Dynamic Distribution of Linker Histone H1.5 in Cellular Differentiation |
GSE41795 |
Accelerated high-yield generation of limb-innervating motor neurons from human stem cells |
GSE41820 |
High-resolution genome-wide mapping of AHR and ARNT binding sites by ChIP-Seq |
GSE42006 |
Translatome of A549, H1299 and HBE cells |
GSE42044 |
DNA methylation changes are a late event in Acute Promyelocytic Leukemia and coincide with loss of transcription factor binding (sequencing) |
GSE42075 |
RUNX1 is a key target gene in t(4;11) leukemias and contributes to gene activation by interacting with the AF4-MLL complex |
GSE42119 |
DNA methylation changes are a late event in Acute Promyelocytic Leukemia and coincide with loss of transcription factor binding |
GSE42147 |
Limitations and possibilities of low cell number ChIP-seq |
GSE42161 |
Chromatin occupancy of key transcriptional regulators in the presence of the BET bromodomain inhibitor JQ1 |
GSE42180 |
Genome-wide binding of WDR5 and GRHL3 |
GSE42211 |
Genome wide occupancy of SUMO machinery in proliferative and Ras-induced senescent human primary fibroblasts |
GSE42213 |
SUMO is an Integral and Instructive Component of Chromatin in Cell Growth and Senescence |
GSE42262 |
Chromatin occupancy of key transcriptional regulators in P493-6 cells with various levels of c-Myc expression |
GSE42355 |
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers [ChIP-seq] |
GSE42413 |
The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb |
GSE42420 |
CFIm25 links alternative polyadenylation to glioblastoma tumour suppression |
GSE42509 |
Transcriptome-profiling (RNA-seq) and Ribosome-profiling (Ribo-seq) in proliferation, quiescence, senescence and transformed states. |
GSE42563 |
DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation (RNA-seq) |
GSE42566 |
The Central Role of EED in the Orchestration of Polycomb Group Complexes |
GSE42575 |
CBFb Stabilizes HIV Vif to Counteract APOBEC3 at the Expense of RUNX1 Target Gene Expression [ChIP-seq] |
GSE42576 |
CBFb Stabilizes HIV Vif to Counteract APOBEC3 at the Expense of RUNX1 Target Gene Expression |
GSE42602 |
DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation |
GSE42701 |
Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated microRNA Circuits |
GSE42790 |
Quality evaluation of Methyl Binding Domain based kits for enrichment DNA-methylation sequencing |
GSE42792 |
Profiling Genome-wide Chromatin Methylation with Engineered Posttranslation Apparatus within Living Cells |
GSE42881 |
A High-Resolution Enhancer Atlas of the Developing Telencephalon |
GSE42945 |
The novel functional effects of exogenous EBV-miR-BARTs on NPC progression |
GSE42951 |
Genome-wide maps of WT and over-expressing CenH3/CENP-A in Human HeLa S3 cells |
GSE42958 |
Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX |
GSE42960 |
The effect of nicotinamide on dysregulated genes associated with frataxin deficiency in FRDA. |
GSE42961 |
Determination of the spatial organization of the FXN gene locus by using Chromosome Conformation Capture technique coupled with High-throughtput sequencing (3C-seq). |
GSE43022 |
ZFX controls the propagation and cell-of-origin characteristics of acute leukemia |
GSE43036 |
Synergistic Activation of Inflammatory Cytokine Genes by Priming of Regulatory DNA Elements for Increased Transcription in Response to TLR Signaling |
GSE43063 |
Genome wide mapping of histone 3 lysine 79 dimethylation in MLL rearranged and control human leukemia cell lines |
GSE43069 |
MLL-AF6 leukemia |
GSE43070 |
Genome-wide Analysis of Chromatin Interactions in Human Cells |
GSE43093 |
Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells (RNA-seq) |
GSE43094 |
Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells (ChIP-BS) |
GSE43096 |
Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells |
GSE43126 |
Next Generation Sequencing Facilitates Quantitative Analysis of CNE1-mock, CNE1-BART1, CNE-BART3, CNE1-BART7 cells |
GSE43143 |
RNA-Seq analysis of neurons derived from induced pluripotent stem cells reprogrammed from dental pulp |
GSE43147 |
Genome wide maps of ZFX binding in human leukemia cell lines |
GSE43152 |
A unique epigenetic signature is associated with active DNA replication loci in human embryonic stem cells |
GSE43296 |
Polysome-associated mRNA profiling of cancer cells in response to CXCL12 and IGF1 |
GSE43306 |
Translating transcriptome of cancer cells in situ in mesenchymal-rich tumor microenvironment |
GSE43350 |
Lineage-specific functions of Bcl6 in immunity and inflammation are mediated through distinct biochemical mechanisms |
GSE43417 |
Molecular characterization of t(2;14)(q22;q32) and t(6;14)(q25;q32) translocations in mixed myeloid/T lymphoid leukemia patients. |
GSE43440 |
Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response |
GSE43473 |
Integrated analysis of DNA methylation and RNA transcriptome during the differentiation of human pluripotent stem cells into retinal pigment epithelial cells |
GSE43499 |
Genome-wide analysis of histone modifications H3K4me3, H3K4me1, and H3K27ac in primary human corneal epithelial cells |
GSE43520 |
The evolution of lncRNA repertoires and expression patterns in tetrapods |
GSE43526 |
Co-ordinate inhibition of autism candidate genes by topoisomerase inhibitors [Seq] |
GSE43549 |
Heterokaryon RNA Sequencing |
GSE43550 |
Small RNA Solexa sequencing of colorectal tumor and adjancent normal tissues |
GSE43586 |
Evaluation of the effectiveness of semen collection and sperm purification methods for spermatozoa transcript profiling |
GSE43603 |
Differential gene expression and exon usage in bone marrow from RARS patients with SF3B1 somatic mutations compared to healthy patients. |
GSE43666 |
Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing |
GSE43678 |
Redefinition of Human Androgen Responsive Elements [FOX_ChIP_exo] |
GSE43726 |
RNA-sequencing (RNA-seq) in breast cancer cell lines after ectopic manipulation of miR-26a expression |
GSE43743 |
ChIP-Seq of transcriptional regulators in MM1S cells upon small molecule treatment. |
GSE43770 |
Vitamin d receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy |
GSE43785 |
Redefinition of Human Androgen Responsive Elements [ChIP-Seq, RNA-Seq] |
GSE43786 |
Physiological Vascular Permeability Requires Induction of Endothelial NR4A1 by Progesterone Receptor [ChIP-Seq] |
GSE43788 |
Physiological Vascular Permeability Requires Induction of Endothelial NR4A1 by Progesterone Receptor [RNA-Seq] |
GSE43789 |
Physiological Vascular Permeability Requires Induction of Endothelial NR4A1 by Progesterone Receptor |
GSE43791 |
Redefinition of Human Androgen Responsive Elements |
GSE43801 |
Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles |
GSE43834 |
A Stable Transcription Factor Complex Nucleated by Dimeric AML1-ETO Controls Leukaemogenesis |
GSE43876 |
Mtg16 regulates E protein activity and lineage specification in dendritic cell development (ChIP-seq) |
GSE43900 |
Co-ordinate inhibition of autism candidate genes by topoisomerase inhibitors |
GSE43916 |
Hierarchical mechanisms for transcription factor-mediated reprogramming of fibroblasts to neurons |
GSE43963 |
Mtg16 regulates E protein activity and lineage specification in dendritic cell development |
GSE43984 |
Transcriptome analysis of human sinusoidal endothelial cells, hepatocyte |
GSE43985 |
The Estrogen receptor alpha regulated NEAT1 long non-coding RNA promotes prostate cancer progression [ChIP-Seq] |
GSE43988 |
The Estrogen receptor alpha regulated NEAT1 long non-coding RNA promotes prostate cancer progression |
GSE44039 |
TET1 is a maintenance DNA demethylase that prevents methylation spreading in adult cells |
GSE44061 |
KRAB/KAP1-microRNA cascade regulates erythropoiesis through the stage-specific control of mitophagy [Seq] |
GSE44065 |
KRAB/KAP1-microRNA cascade regulates erythropoiesis through the stage-specific control of mitophagy |
GSE44098 |
Chem-Seq of chemical derivatives in MM1S cells |
GSE44183 |
Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing |
GSE44217 |
Mechanisms of Ikaros Tumor Suppression with HDAC1 through distinct histone markers in Pre-B ALL Leukemia |
GSE44218 |
Mechanism of Ikaros tumor suppression in Leukemia |
GSE44220 |
Identification of SF-1 genomic binding sites in conditions of basal and increased dosage in the H295R adrenocortical tumor cell line |
GSE44221 |
Identification of chromatin regulatory sites in conditions of basal and increased SF-1 dosage in the H295R adrenocortical tumor cell line |
GSE44224 |
Mechanisms of dosage-dependent regulation of gene expression by transcription factor SF-1 |
GSE44267 |
Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells |
GSE44309 |
Whole-genome landscape of histone H2AX and γ-H2AX along with related factors in activated cells |
GSE44442 |
Genomic binding profile of TAL1 in human Endothelial Colony-Forming Cells |
GSE44450 |
Stranded RNA-seq of H9 cells |
GSE44457 |
Cellular generation of 5-Hydroxymethylcytosine by redox-active chemicals via an unprecedent non-enzymatic mechanism |
GSE44461 |
Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap |
GSE44546 |
TAL1 in human Endothelial Colony-Forming Cells |
GSE44568 |
Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition [RNA-Seq] |
GSE44585 |
RNA helicase A is necessary for KIF1Bβ tumor suppression in neuroblastoma |
GSE44615 |
Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition [PAR-CLIP] |
GSE44616 |
Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition |
GSE44618 |
Single Cell RNA-Seq |
GSE44639 |
Altered microRNA expression in individuals at high risk of type 1 diabetes |
GSE44646 |
Repeat elements study in pluripotent stem cells [RNA-seq] |
GSE44718 |
Multiple roles for Grainyheadlike transcription factors in the establishment and maintenance of human mucociliary airway epithelium |
GSE44724 |
Genome-wide maps of CENP-A nucleosomes in three neocentromere-containing cell lines |
GSE44742 |
Genetic differences underlying chromatin discordance between monozygotic twins [FAIR-seq] |
GSE44800 |
A Probabilistic Model of Transcription Dynamics applied to Estrogen Signalling in Breast Cancer Cells |
GSE44806 |
Whole genome bisulfite-seq of two healthy males. |
GSE44849 |
Genome binding profile of TFIIH helicases XPB and XPD in HT1080 cells |
GSE44866 |
Classification of cancer cell lines using a promoter-targeted liquid hybridization capture-based bisulfite sequencing approach |
GSE44875 |
LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression |
GSE44931 |
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers |
GSE44976 |
Global analysis of alternative splicing regulated by RBM10 |
GSE44985 |
Nucleosome positioning in the IMR90 cell line |
GSE45133 |
Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types (RNA-seq) |
GSE45137 |
Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types |
GSE45144 |
Genome-wide Analysis of Transcriptional Regulators in Human Blood Stem/Progenitor Cells reveals a densely interconnected network of coding and non-coding genes. |
GSE45157 |
Trans-chromosomal regulation by a novel lincRNA required for adipogenesis that escapes X-chromosome inactivation |
GSE45159 |
Genetic regulation of human adipose microRNA expression and its consequences for metabolic traits |
GSE45201 |
Amplitude modulation of androgen signaling by c-MYC [ChIP-Seq] |
GSE45202 |
Amplitude modulation of androgen signaling by c-MYC [RNA-Seq] |
GSE45203 |
Amplitude modulation of androgen signaling by c-MYC |
GSE45237 |
Frac-seq reveals preferential polyribosome association of minor mRNA isoforms |
GSE45241 |
G-Quadruplex structures are stable and detectable in human genomic DNA. |
GSE45258 |
RNA-seq analysis of HT-29, MCF10A, and MDA-MB-436 cells |
GSE45263 |
Increased Neanderthal ancestry in genomic regions associated with lipid catabolism in contemporary Europeans |
GSE45326 |
Identification of expressed and conserved human non-coding RNAs |
GSE45361 |
Laser Capture Microdissection-Reduced Representation Bisulfite Sequencing (LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse |
GSE45393 |
Facilitates chromatin transcription complex is a marker and target of aggressive cancers with lower survival rates |
GSE45394 |
Anti-ZFX ChIP-seq in a human medulloblastoma cell line |
GSE45396 |
Transcription factor ZFX |
GSE45428 |
Using RNA-Seq to create sample-specific proteomic databases that enable mass spectrometric discovery of splice junction peptides |
GSE45441 |
SFMBT1 Functions with LSD1 to Regulate Expression of Canonical Histone Genes and Chromatin-Related Factors [ChIP-Seq] |
GSE45442 |
SFMBT1 Functions with LSD1 to Regulate Expression of Canonical Histone Genes and Chromatin-Related Factors [RNA-Seq] |
GSE45453 |
Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity; implications for possible immune adjuvant therapy |
GSE45489 |
SFMBT1 Functions with LSD1 to Regulate Expression of Canonical Histone Genes and Chromatin-Related Factors |
GSE45504 |
Muscleblind-like proteins regulate embryonic stem cell-specific alternative splicing and reprogramming II |
GSE45505 |
Muscleblind-like proteins regulate embryonic stem cell-specific alternative splicing and reprogramming |
GSE45530 |
DNA-RNA Immunoprecipitation sequencing (DRIP-seq) of human NT2 cells |
GSE45669 |
RNA-sequencing of the human milk fat layer during colostrum, transitional, and mature stages of lactation |
GSE45722 |
Characterization of human plasma-derived exosomal RNAs |
GSE45732 |
Gene expression analysis of breast cancer cell-lines |
GSE45785 |
Transcriptome-profiling (RNA-seq) and Ribosome-profiling (Ribo-seq) of BJ cells treated with Nutlin-3a, an MDM2 inhibitor, which induces p53. |
GSE45803 |
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo |
GSE45822 |
Functional Importance of eRNAs for Estrogen-dependent Gene Transcriptional Activation |
GSE45833 |
p53 induces transcriptional and translational programs to supress cell proliferation and growth |
GSE45852 |
Tight coordination of protein translation and heat shock factor 1 activation supports the anabolic malignant state [ChIP-Seq] |
GSE45853 |
Tight coordination of protein translation and heat shock factor 1 activation supports the anabolic malignant state |
GSE45864 |
PHF6 OCCUPANCYIN HUMAN T-CELL ACUTE LYMPHOBLASTIC LEUKEMIA |
GSE45982 |
EZH2 is required for germinal center formation and somatic EZH2 mutations promote lymphoid transformation |
GSE45984 |
ChIP-Seq for cofactors in cancer |
GSE46014 |
Histone modification and TF ChIP-Seq for glioblastoma cell lines and neural stem cells |
GSE46016 |
Epigenomic profiling of glioblastoma stem cells |
GSE46030 |
Selective demethylation and altered gene expression are associated with ICF Syndrome in human induced pluripotent stem cells and mesenchymal stem cells |
GSE46044 |
A compendium of hematopoietic regulators, chromatin modifiers and basal transcription factors occupy CBF-MYH11/RUNX1 target genes |
GSE46055 |
Genome-wide location analysis in breast cancer cell-lines |
GSE46056 |
RNAseq of PRMT4KD in human cord blood derived CD34+ cells |
GSE46073 |
Gene expression and genome-wide location analysis of breast cancer cell-lines |
GSE46074 |
Comprehensive Functional Annotation of Seventy-One Breast Cancer Risk Loci |
GSE46130 |
Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells |
GSE46135 |
Epigenome analysis of DNA modification 5-hydroxymethylcytosine in normal, abnormal, and globozoospermia sperm genomes |
GSE46194 |
Multiple roles for Grainyhead-like transcription factors in the establishment and maintenance of human mucociliary airway epithelium (ChIP-Seq) |
GSE46224 |
Deep RNA Sequencing Reveals Dynamic Regulation of Myocardial Noncoding RNA in Failing Human Heart and Remodeling with Mechanical Circulatory Support |
GSE46228 |
Widespread Transcription beyond mRNA 3’ Ends Yields Abundant Regulatory RNAs |
GSE46237 |
NR2C/F orphan receptors induce telomere-genome rearrangements in ALT |
GSE46323 |
Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose |
GSE46327 |
Genome-wide DNA methylation aberrations in human atherosclerosis (sequencing) |
GSE46401 |
Genome-wide DNA methylation aberrations in human atherosclerosis |
GSE46450 |
Age-related methylation changes are associated with altered transcriptional circuitry [Methyl-seq] |
GSE46462 |
The role of SMCHD1 in the formation of constitutive heterochromatin |
GSE46486 |
Age-related methylation changes are associated with altered transcriptional circuitry [RNA-seq] |
GSE46487 |
Age-related methylation changes are associated with altered transcriptional circuitry |
GSE46490 |
High-throughput RNA sequencing of human preovulatory cumulus and mural granulosa cells (mRNA) |
GSE46502 |
Selective suppression of endothelial cytokine production by progesterone receptor [RNA-seq] |
GSE46503 |
Selective suppression of endothelial cytokine production by progesterone receptor |
GSE46508 |
Small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes |
GSE46513 |
RNA-sequencing analysis of 5' capped RNAs identifies novel differentially expressed genes in sessile serrated colon polyps (SSPs) |
GSE46514 |
Comparing proteomics and RISC immunoprecipitations to identify targets of Epstein-Barr viral miRNAs [RISC-IP-seq] |
GSE46523 |
Whole transcriptome RNA-seq of undiseased human prefrontal cortex |
GSE46562 |
RNA-seq in neurons derived from iPSCs in controls and patients with schizophrenia and 22q11 del |
GSE46572 |
Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] |
GSE46579 |
A blood based 12-miRNA signature of Alzheimer patients |
GSE46595 |
Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer |
GSE46597 |
Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer |
GSE46598 |
Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer |
GSE46611 |
MicroRNA Target Site Identification by Integrating Sequence and Binding Information |
GSE46613 |
Genome-wide and experimental resolution of relative translation elongation speed at individual gene level in human cells |
GSE46637 |
[E-MTAB-1309] GENCODE PCR-Seq Batch IX |
GSE46638 |
[E-MTAB-1310] GENCODE PCR-Seq Batch X |
GSE46639 |
[E-MTAB-1505] GENCODE PCR-Seq Batch IX |
GSE46644 |
Charting a dynamic DNA methylation landscape of the human genome |
GSE46663 |
Discovery and Characterization of Super-Enhancer Associated Dependencies in Diffuse Large B-Cell Lymphoma |
GSE46665 |
Identification of differentially expressed transcripts and pathways one week and six months following implant of left ventricular devices |
GSE46698 |
Genome-wide parent-of-origin DNA methylation analysis [Methyl-seq] |
GSE46705 |
Identification and Characterization of the Mammalian Nuclear RNA N6-Adenosine Methyltransferase Core Complex |
GSE46710 |
Whole-genome analysis of 5-hydroxymethylcytosines and 5-methylcytosines at base resolution in human brain |
GSE46832 |
De novo mutations in the genome organizer CTCF cause Intellectual Disability (ChIP-Seq) |
GSE46833 |
De novo mutations in the genome organizer CTCF cause Intellectual Disability |
GSE46837 |
SOX2 and p63 occupancy in human squamous carcinoma cell lines and embryonic stem cells. |
GSE46846 |
Induction of Prolonged Early G1 Arrest by CDK4/CDK6 Inhibition Reprograms Lymphoma Cells for Durable PI3Kδ Inhibition Through PIK3IP1 |
GSE46902 |
FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis |
GSE46908 |
Identification of LIN28-bound mRNAs reveals features of target recognition and regulation |
GSE46968 |
Genome-wide miRNA turnover profile in HDMYZ cells after transcription inhibition |
GSE47027 |
LRH-1 governs vital transcriptional programs in endocrine sensitive and resistant breast cancer cells: LRH-1 ChIP-seq |
GSE47041 |
Discovery of the p53 targetome in MCF7 cells from ChIP-Seq data |
GSE47042 |
Discovery of the p53 targetome in MCF7 cells from RNA-seq data |
GSE47043 |
Discovery of the p53 targetome in MCF7 cells from RNA-seq and ChIP-seq data |
GSE47058 |
Differential gene expression by suppression of either SOX2 or TP63 in KYSE70 human esophageal squamous carcinoma cell line. |
GSE47088 |
Identification of novel imprinted differentially methylated regions by global analysis of human parthenogenetic induced pluripotent stem cells |
GSE47095 |
A Large-Scale RNAi-Based Mouse Tumorigenesis Screen Identifies New Lung Cancer Tumor Suppressors that Repress FGFR Signaling |
GSE47114 |
RNA-Guided Human Gene Activation by Cas9/CRISPR-Based Engineered Transcription Factors |
GSE47121 |
Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0 |
GSE47190 |
ChIP-seq of MYST acetyltransferases |
GSE47226 |
Functional signature for the recognition of specific target mRNAs by human staufen1 protein |
GSE47399 |
mRNA sequencing identifies differential gene expresssion profiles between ASCC3 knock-down cells and control cells |
GSE47428 |
A haploid gene-trap mutant collection enables functional genetics in human cells |
GSE47488 |
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [RNA-Seq] |
GSE47510 |
Genome-wide maps of H3K4me3 and H3K27me3 in human FOXP3+ Treg cells and the corresponding FOXP3-losing cells |
GSE47534 |
Integrated analysis of microRNA and mRNA expression and association with HIF binding in MCF-7 cells under hypoxia |
GSE47539 |
Experimental characterization of the human non-sequence-specific nucleic acid interactome |
GSE47597 |
RNA immunoprecipitation (RIP) of IGF2BP3 from pancreatic cancer cell extracts cultured on fibronectin |
GSE47602 |
Integrated analysis of microRNA and mRNA expression and association with HIF binding in MCF-7 cells under hypoxia (miRNA-Seq) |
GSE47604 |
Transcriptome-wide interaction mapping of hnRNP L in human T cells with CLIP-seq |
GSE47614 |
Characterization of genome-methylome interactions in 22 nuclear pedigrees |
GSE47626 |
Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes |
GSE47636 |
Transcriptional profiling of FOXP3+ Treg cells and corresponding FOXP3-losing cells |
GSE47677 |
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [ChIP-Seq] |
GSE47678 |
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition |
GSE47702 |
ALDH2, CCNE1 and SMAD3 are Potential Prognostic Markers for Upper Tract Urothelial Carcinoma Revealed by Massively Parallel Sequencing. |
GSE47718 |
Smoking Dysregulates the Human Airway Basal Cell Transcriptome at COPD-linked Risk Locus 19q13.2 |
GSE47747 |
Contribution of histone methylation to the plasticity of human FOXP3+ Treg cells |
GSE47753 |
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position |
GSE47774 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium |
GSE47792 |
SEQC Project |
GSE47802 |
SMARCAD1 Regulates Nucleosome Positioning and Maintenance of the Naïve Pluripotent State |
GSE47804 |
LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [ChIRP-seq] |
GSE47805 |
LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [GRO-seq I] |
GSE47806 |
LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [GRO-seq II] |
GSE47807 |
LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs |
GSE47849 |
POLR3G and POLR3GL-RNA polymerase III target genes |
GSE47858 |
High-efficiency RNA cloning enables quantitative measurement of miRNA expression by deep sequencing |
GSE47917 |
Genome alterations in human pluripotent stem cells as very early events highly dependent on cell passaging conditions |
GSE47933 |
Impact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol |
GSE47938 |
Multiple roles for LEC in initiation and elongation phases of snRNA gene transcription |
GSE47944 |
Environmental factors transmitted by aryl hydrocarbon receptor influence severity of psoriatic skin inflammation [RNA-Seq] |
GSE47946 |
Transcriptome of embryonic stem cells cultured in enzymatic and mechanic passaging methods [RNA-seq] |
GSE47965 |
Environmental factors transmitted by aryl hydrocarbon receptor influence severity of psoriatic skin inflammation |
GSE47966 |
Global epigenomic reconfiguration during mammalian brain development |
GSE47976 |
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3’ UTRs |
GSE47987 |
FoxA1 inhibits androgen receptor expression and suppresses prostate cancer metastasis [DU145, ChIP-seq] |
GSE47991 |
Identification of genetic variants that affect histone modifications in human cells |
GSE48159 |
Mapping ERβ genomic binding sites reveals unique genomic features and identifies EBF1 as an ERβ interactor [Gro-Seq] |
GSE48161 |
Mapping ERβ genomic binding sites reveals unique genomic features and identifies EBF1 as an ERβ interactor |
GSE48173 |
Leucegene |
GSE48176 |
TFAM ChIP-seq in HeLa cells |
GSE48230 |
Transcription factors OVOL1 and OVOL2 induce the mesenchymal to epithelial transition in human cancer |
GSE48245 |
MOV10 is a 5' to 3' RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation Along 3' UTRs (PAR-CLIP) |
GSE48263 |
Genome wide mapping of effects of U6atac knockdown on pre-mRNA splicing |
GSE48286 |
High-throughput sequencing of PROMPT-enriched samples. |
GSE48314 |
CHD5 is required for neurogenesis and has a dual role in facilitating gene expression and Polycomb gene repression |
GSE48374 |
SUMOylation Regulates the Anti-Proliferative Gene Signature Programs of Glucocorticoid Receptor (ChIP-seq) |
GSE48379 |
SUMOylation Regulates the Anti-Proliferative Gene Signature Programs of Glucocorticoid Receptor |
GSE48403 |
The Wnt/β-catenin-signaling pathway is modulated by androgen ablation therapy for advanced clinical prostate cancer and contributes to androgen independent cell growth |
GSE48423 |
Histone variant H3.3-specific readout of H3K36 trimethylation by ZMYND11 links transcription elongation control to tumour suppression |
GSE48515 |
ChIP-seq in MRC5 hIPSCs overexpressing MEG3 RNA. |
GSE48516 |
ChIP-seq in MEG3+ and MEG3- hIPSCs |
GSE48518 |
Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin |
GSE48552 |
Alteration of the microRNA network during the progression of Alzheimer’s disease |
GSE48580 |
Genome-wide methylation maps for Proliferating and Senescent cells |
GSE48603 |
Transcriptome and Translatome Profiling of Caco-2 cells |
GSE48660 |
An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example |
GSE48678 |
Genome-Wide Transcriptional Effects of the Anti-Cancer Agent Camptothecin |
GSE48785 |
Global response to chemotherapy-induced apoptosis |
GSE48812 |
Genome-wide transcriptome analysis of the dietary chemopreventive phytochemical sulforaphane on normal and prostate cancer cells. |
GSE48831 |
Viral small RNAs in Sindbis virus-infected mammalian cells |
GSE48843 |
RNA-Seq analysis of primary AML specimens exposed to AhR modulating agents |
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