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Sample GSM1894912 Query DataSets for GSM1894912
Status Public on Aug 09, 2018
Title Unknown_74
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_74_Detection_Pval

Data table
ID_REF VALUE Unknown_74_Detection_Pval
ILMN_1762337 5.78251660530686 0.65876
ILMN_2055271 6.07470849444162 0.07246
ILMN_1736007 6.08956092867656 0.05929
ILMN_2383229 5.6483464181529 0.88669
ILMN_1806310 5.95446801611144 0.24901
ILMN_1779670 6.01400344656627 0.14756
ILMN_2321282 6.18650855341245 0.01054
ILMN_1671474 6.08722501204382 0.0606100000000001
ILMN_1772582 6.06648431757938 0.08432
ILMN_1735698 5.9592519731895 0.23584
ILMN_1653355 6.04162380295074 0.11594
ILMN_1717783 5.75020586305786 0.73518
ILMN_1705025 5.89616760728491 0.37681
ILMN_1814316 5.75020586305786 0.73386
ILMN_2359168 5.6483464181529 0.88669
ILMN_1731507 5.62249456674159 0.91831
ILMN_1787689 6.07602544533942 0.0698299999999999
ILMN_1745607 5.70484087421707 0.8195
ILMN_2136495 5.85305569663869 0.47958
ILMN_1668111 5.48958421859724 0.98287

Total number of rows: 48803

Table truncated, full table size 1771 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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