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Sample GSM1894905 Query DataSets for GSM1894905
Status Public on Aug 09, 2018
Title Unknown_67
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_67_Detection_Pval

Data table
ID_REF VALUE Unknown_67_Detection_Pval
ILMN_1762337 5.81430900875878 0.55204
ILMN_2055271 5.82555312383068 0.53096
ILMN_1736007 5.90792154071474 0.36364
ILMN_2383229 5.71661108309938 0.77602
ILMN_1806310 6.03671439075557 0.14229
ILMN_1779670 6.01430920141076 0.17523
ILMN_2321282 6.16535845373493 0.03294
ILMN_1671474 6.09696624012476 0.07773
ILMN_1772582 6.01101389199592 0.17787
ILMN_1735698 6.22835925301899 0.01054
ILMN_1653355 5.90419528823633 0.36627
ILMN_1717783 5.82180539030552 0.53887
ILMN_1705025 6.19203202918098 0.01845
ILMN_1814316 5.66744250804648 0.85771
ILMN_2359168 5.6331993514527 0.9025
ILMN_1731507 5.68638950305175 0.82082
ILMN_1787689 5.9838932816609 0.21607
ILMN_1745607 5.88550240240713 0.39526
ILMN_2136495 5.77679936575397 0.63505
ILMN_1668111 5.59874111148225 0.92754

Total number of rows: 48803

Table truncated, full table size 1778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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