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Sample GSM1894882 Query DataSets for GSM1894882
Status Public on Aug 09, 2018
Title Unknown_44
Sample type RNA
 
Source name Whole Blood from patient with infection of uncertain bacterial or viral aetiology
Organism Homo sapiens
Characteristics category: Uncertain
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Unknown_44_Detection_Pval

Data table
ID_REF VALUE Unknown_44_Detection_Pval
ILMN_1762337 5.83534953310525 0.52701
ILMN_2055271 6.12075462271241 0.03953
ILMN_1736007 6.04709854945378 0.12385
ILMN_2383229 5.7834148065825 0.66271
ILMN_1806310 5.96288841752294 0.27536
ILMN_1779670 6.02626939805176 0.15283
ILMN_2321282 6.09513707028753 0.06588
ILMN_1671474 5.88774305903638 0.4058
ILMN_1772582 6.08328273665022 0.07773
ILMN_1735698 5.89340032196476 0.39921
ILMN_1653355 6.15660049752388 0.02108
ILMN_1717783 5.75172210530795 0.72859
ILMN_1705025 6.05744136205798 0.10672
ILMN_1814316 5.64791392535394 0.9025
ILMN_2359168 5.85016765362434 0.48617
ILMN_1731507 5.72574592577573 0.76943
ILMN_1787689 6.03604428152066 0.13966
ILMN_1745607 5.74528024868412 0.74308
ILMN_2136495 5.75812936542493 0.71541
ILMN_1668111 5.95785894652945 0.28195

Total number of rows: 48803

Table truncated, full table size 1779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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