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Sample GSM1894838 Query DataSets for GSM1894838
Status Public on Aug 09, 2018
Title Kawasaki_01
Sample type RNA
 
Source name Whole Blood from patient with Kawasaki Disease
Organism Homo sapiens
Characteristics category: Kawasaki Disease
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Kawasaki_01_Detection_Pval

Data table
ID_REF VALUE Kawasaki_01_Detection_Pval
ILMN_1762337 5.74230236828632 0.77207
ILMN_2055271 6.03864155527214 0.11594
ILMN_1736007 5.96717228533763 0.22134
ILMN_2383229 6.08193220818865 0.06588
ILMN_1806310 5.90684274132677 0.35046
ILMN_1779670 5.82038309733703 0.56522
ILMN_2321282 6.22609424838662 0.00658999999999998
ILMN_1671474 5.90684274132677 0.34651
ILMN_1772582 5.86351913284172 0.46904
ILMN_1735698 5.90684274132677 0.34651
ILMN_1653355 5.98807024393206 0.19236
ILMN_1717783 5.98400296359681 0.19631
ILMN_1705025 5.93099042840528 0.29908
ILMN_1814316 5.57601353762588 0.96311
ILMN_2359168 5.82590095771589 0.55731
ILMN_1731507 5.82590095771589 0.55731
ILMN_1787689 6.05081260061383 0.10804
ILMN_1745607 5.55479431672843 0.96838
ILMN_2136495 5.63088160369924 0.93939
ILMN_1668111 5.78073701669025 0.67457

Total number of rows: 48803

Table truncated, full table size 1772 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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