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Sample GSM1894836 Query DataSets for GSM1894836
Status Public on Aug 09, 2018
Title Definite Viral_27
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_27_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_27_Detection_Pval
ILMN_1762337 5.91515052175591 0.38472
ILMN_2055271 5.72994246463518 0.78261
ILMN_1736007 6.01540480655718 0.1726
ILMN_2383229 5.67350666945536 0.87747
ILMN_1806310 5.87585110717253 0.47036
ILMN_1779670 5.70770292462778 0.82609
ILMN_2321282 6.00987618593699 0.18577
ILMN_1671474 6.0262331438854 0.14493
ILMN_1772582 5.89691535115046 0.42029
ILMN_1735698 6.04023479589363 0.11858
ILMN_1653355 6.32000093884067 0.00658999999999998
ILMN_1717783 5.77837158098309 0.66535
ILMN_1705025 5.87347634836096 0.47036
ILMN_1814316 5.91963418269839 0.37549
ILMN_2359168 5.5264743254484 0.97365
ILMN_1731507 5.39471933580804 0.99736
ILMN_1787689 5.92850862509418 0.34519
ILMN_1745607 5.55530716821738 0.96047
ILMN_2136495 5.97093117810832 0.25296
ILMN_1668111 5.57107163268012 0.95389

Total number of rows: 48803

Table truncated, full table size 1812 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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