NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1894828 Query DataSets for GSM1894828
Status Public on Aug 09, 2018
Title Definite Viral_19
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_19_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_19_Detection_Pval
ILMN_1762337 5.80023301623933 0.66798
ILMN_2055271 6.01352947764747 0.20685
ILMN_1736007 6.0040819566981 0.22661
ILMN_2383229 5.74160277275079 0.79315
ILMN_1806310 5.9367993812246 0.34651
ILMN_1779670 5.97107680104321 0.27931
ILMN_2321282 6.18377956210588 0.01318
ILMN_1671474 5.97541837985133 0.27404
ILMN_1772582 5.48774483619201 0.98814
ILMN_1735698 5.91744404044842 0.38472
ILMN_1653355 6.2055550462656 0.01054
ILMN_1717783 5.77820548423243 0.7141
ILMN_1705025 5.91002632897894 0.40184
ILMN_1814316 5.84584077191661 0.55072
ILMN_2359168 5.94153114482512 0.33597
ILMN_1731507 5.73300962765193 0.79842
ILMN_1787689 6.11512462356964 0.06851
ILMN_1745607 5.66823283408113 0.91304
ILMN_2136495 5.85895504441228 0.50725
ILMN_1668111 5.66218493419827 0.91963

Total number of rows: 48803

Table truncated, full table size 1776 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap