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Sample GSM1894814 Query DataSets for GSM1894814
Status Public on Aug 09, 2018
Title Definite Viral_05
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_05_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_05_Detection_Pval
ILMN_1762337 5.82381252923459 0.52437
ILMN_2055271 6.13129394239171 0.02108
ILMN_1736007 6.06124295936312 0.10145
ILMN_2383229 5.99116983769363 0.18841
ILMN_1806310 5.77425539024529 0.63505
ILMN_1779670 5.78051167279135 0.62055
ILMN_2321282 6.13601943933267 0.01581
ILMN_1671474 5.97393670552785 0.21212
ILMN_1772582 6.04589955646534 0.11989
ILMN_1735698 5.97393670552785 0.21344
ILMN_1653355 6.15282229774977 0.01186
ILMN_1717783 5.81767778595632 0.53228
ILMN_1705025 5.83907815786028 0.48221
ILMN_1814316 5.92807833137061 0.28458
ILMN_2359168 5.74904366605471 0.67325
ILMN_1731507 5.47598438681096 0.98814
ILMN_1787689 5.86630918948086 0.42161
ILMN_1745607 5.68132763115211 0.80501
ILMN_2136495 6.11906229401944 0.0303
ILMN_1668111 5.99116983769363 0.18841

Total number of rows: 48803

Table truncated, full table size 1778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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