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Sample GSM1894784 Query DataSets for GSM1894784
Status Public on Aug 09, 2018
Title Control_14
Sample type RNA
 
Source name Whole Blood from healthy control patient
Organism Homo sapiens
Characteristics category: Control
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_14_Detection_Pval

Data table
ID_REF VALUE Control_14_Detection_Pval
ILMN_1762337 5.89455063692727 0.40711
ILMN_2055271 6.00590282388018 0.18577
ILMN_1736007 5.80555325114063 0.6087
ILMN_2383229 5.75071002200127 0.73254
ILMN_1806310 5.87664041451002 0.45455
ILMN_1779670 5.7082579075397 0.81423
ILMN_2321282 6.15846488983802 0.00922000000000001
ILMN_1671474 5.93195386158108 0.32543
ILMN_1772582 5.89709064962014 0.40711
ILMN_1735698 6.04097108409731 0.12912
ILMN_1653355 5.83490849489502 0.54282
ILMN_1717783 5.60130130908566 0.94071
ILMN_1705025 5.9343835397363 0.32411
ILMN_1814316 5.83754981407064 0.53623
ILMN_2359168 5.91967257011432 0.34519
ILMN_1731507 5.54486909032224 0.96706
ILMN_1787689 5.78111444529633 0.66535
ILMN_1745607 5.90970357890865 0.36627
ILMN_2136495 5.77563073214287 0.67325
ILMN_1668111 5.61356223106435 0.93676

Total number of rows: 48803

Table truncated, full table size 1792 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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