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Sample GSM1894782 Query DataSets for GSM1894782
Status Public on Aug 09, 2018
Title Control_12
Sample type RNA
 
Source name Whole Blood from healthy control patient
Organism Homo sapiens
Characteristics category: Control
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_12_Detection_Pval

Data table
ID_REF VALUE Control_12_Detection_Pval
ILMN_1762337 5.78837282956746 0.64163
ILMN_2055271 6.11498863924904 0.0527
ILMN_1736007 5.99051421270453 0.19631
ILMN_2383229 5.85837066917665 0.47958
ILMN_1806310 5.82540261687421 0.57049
ILMN_1779670 5.93770281813545 0.29249
ILMN_2321282 6.25952114026933 0.00658999999999998
ILMN_1671474 5.9687701229234 0.24242
ILMN_1772582 5.97861115207602 0.22134
ILMN_1735698 5.84349941736477 0.51647
ILMN_1653355 6.10430612981884 0.05929
ILMN_1717783 5.90466006910034 0.36627
ILMN_1705025 5.86132227214623 0.47431
ILMN_1814316 5.75342894065866 0.70619
ILMN_2359168 5.93232042279189 0.31094
ILMN_1731507 5.30807419197444 0.99868
ILMN_1787689 6.05306503900565 0.11594
ILMN_1745607 5.86426636430187 0.46772
ILMN_2136495 5.656549407378 0.87615
ILMN_1668111 5.84349941736477 0.51383

Total number of rows: 48803

Table truncated, full table size 1793 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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