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| Status |
Public on Dec 30, 2015 |
| Title |
control EB2 |
| Sample type |
SRA |
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| Source name |
enteroblast from the anterior midgut of adult fly
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| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: adult midgut
cell type: enteroblast
developmental stage: 16-18 days adult
gender: female
biomarker: Su(H)GBE-Gal4, UAS-CD8::GFP
genotype/variation: wild-type
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| Treatment protocol |
FACS sorted
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| Growth protocol |
25 degree
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| Extracted molecule |
total RNA |
| Extraction protocol |
Arcturus PicoPure RNA Isolation Kit
TruSeq RNA Sample Prep Kit-v2
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
total RNA, but selected for mRNA, and amplified subsequently
a456_vs_a123_sig.txt
a456_vs_a123.txt
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| Data processing |
Mapping: Bowtie2
Expression quantification: Count reads in Exon (Own script)
Differentially gene expression: Published Method (check reference)
Genome_build: Drosophila Melanogaster Version 6.02
Supplementary_files_format_and_content: Text files, using Flybase ID use row id, mean expression in different conditions,variance in difference condition, fold change, pval and adjusted pvalues
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| Submission date |
Jul 20, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
ZongZhao Zhai |
| E-mail(s) |
[email protected]
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| Phone |
+41 21 6930628
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| Organization name |
EPFL
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| Lab |
Bruno Lemaitre group
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| Street address |
EPFL-SV-GHI-UPLEM station 19
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| City |
Lausanne |
| ZIP/Postal code |
CH-1015 |
| Country |
Switzerland |
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| Platform ID |
GPL13304 |
| Series (1) |
| GSE71093 |
EB-transcriptome in Drosophila midgut |
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| Relations |
| Reanalyzed by |
GSM3276004 |
| BioSample |
SAMN03890542 |
| SRA |
SRX1100888 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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