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Sample GSM17391 Query DataSets for GSM17391
Status Public on Mar 19, 2008
Title NCR7
Sample type RNA
 
Source name Phenotypically normal mouse (+/+ or +/df) fed 30% less of standard pelleted diet with respect to the amount consumed by normal female ad libitum fed +/+ and +/df mice
Organism Mus musculus
Extracted molecule total RNA
 
Description Normal female Ames mouse (+/+ or +/df) with ad libitum access to water and fed 30% less of the standard pelleted diet with respect to the amount consumed by normal female ad libitum fed +/+ and +/df mice (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops. Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction
 
Submission date Mar 01, 2004
Last update date Mar 19, 2008
Contact name Stephen R. Spindler
E-mail(s) [email protected]
Phone 909-787-3597
Fax 909-787-4434
URL http://www.biochemistry.ucr.edu/faculty/spindler.html
Organization name University of California, Riverside
Department Biochemistry
Street address
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL81
Series (2)
GSE1089 Normal Calorie Restricted
GSE1093 caloric restriction

Data table header descriptions
ID_REF
Stat Pairs Number of probe pairs for each transcription unit
Stat Pairs Used Number of probe pairs used in the analysis
VALUE MAS 5.0 Calculated intensity of the signal measured by each probe set
ABS_CALL Absent (A), Present (P), or Marginal (M) as judged by the detection P value
Detection p-value Detection P value calculated by MAS 5.0

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 61 A 0.645547
AFFX-MurIL10_at 20 20 48.1 A 0.440646
AFFX-MurIL4_at 20 20 23.2 A 0.382599
AFFX-MurFAS_at 20 20 119.9 P 0.006187
AFFX-BioB-5_at 20 20 314.1 P 0.015183
AFFX-BioB-M_at 20 20 495.7 P 0.001593
AFFX-BioB-3_at 20 20 308.7 P 0.001796
AFFX-BioC-5_at 20 20 822.4 P 0.000258
AFFX-BioC-3_at 20 20 383.2 P 0.00034
AFFX-BioDn-5_at 20 20 936.4 P 0.000195
AFFX-BioDn-3_at 20 20 4808.4 P 0.000297
AFFX-CreX-5_at 20 20 9865.9 P 0.00006
AFFX-CreX-3_at 20 20 12606.4 P 0.000044
AFFX-BioB-5_st 20 20 60.1 A 0.425962
AFFX-BioB-M_st 20 20 109.9 A 0.672921
AFFX-BioB-3_st 20 20 40.4 A 0.724854
AFFX-BioC-5_st 20 20 34.2 A 0.804734
AFFX-BioC-3_st 20 20 26.6 A 0.631562
AFFX-BioDn-5_st 20 20 287.2 A 0.102165
AFFX-BioDn-3_st 20 20 155.5 A 0.123572

Total number of rows: 12488

Table truncated, full table size 393 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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