|
| Status |
Public on Oct 30, 2016 |
| Title |
17806_B-isox_RNA-Seq_Orb2_WT_supernatant_rep6 |
| Sample type |
SRA |
| |
|
| Source name |
RNAseq b-isox precipitation fly heads
|
| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: head
cell type: head extract
genotype: Orb2 WT-GFP (Kruttner et al., 2012)
experimental procedure: RNA-Seq (b-isox)
|
| Growth protocol |
Semi-defined medium, 25ºC
|
| Extracted molecule |
total RNA |
| Extraction protocol |
B-isoxasole precipitation (Han et al., Cell 2012)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
B-isoxasole sample
|
| Data processing |
Basecalling was performed using Real-Time Analysis (RTA) version > 1.12.4.2 or CASAVA 1.9.1.
RNA-seq:
Samples were processed with the RNA-seq Tuxedo pipeline (tophat and cufflinks).
Genome_build: dm3
Supplementary_files_format_and_content: The b-isox RNA-seq data is stored as cufflinks output files on the gene level.
|
| |
|
| Submission date |
Nov 07, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Daniel Gerlach |
| E-mail(s) |
[email protected]
|
| Organization name |
Boehringer Ingelheim RCV GmbH & Co KG
|
| Department |
Global Computational Biology and Digital Sciences
|
| Street address |
Dr.-Boehringer-Gasse 5-11
|
| City |
Vienna |
| ZIP/Postal code |
1121 |
| Country |
Austria |
| |
|
| Platform ID |
GPL13304 |
| Series (1) |
| GSE59611 |
RNA-binding profiles of Drosophila CPEB proteins Orb and Orb2 |
|
| Relations |
| Reanalyzed by |
GSM3287538 |
| BioSample |
SAMN03169670 |
| SRA |
SRX755851 |
