|
| Status |
Public on Oct 20, 2014 |
| Title |
SCBI STAT A |
| Sample type |
SRA |
| |
|
| Source name |
culture
|
| Organism |
Serratia sp. SCBI |
| Characteristics |
genotype/variation: Wild type control
growth state: stationary phase
culture condition: 28 C 18h
|
| Growth protocol |
LB medium 28C for 18h
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Rneasy Kit
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Illumina Casava1.8.3 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and mapped to SCBI whole genome using CLC workstation
Genome_build: CP003424 and CP003425
Supplementary_files_format_and_content: tab-delimited text files include the locus tags of genome and RPKM values for each Sample.
|
| |
|
| Submission date |
Aug 18, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Louis S Tisa |
| E-mail(s) |
[email protected]
|
| Phone |
603-862-2442
|
| Organization name |
University of New Hampshire
|
| Department |
MCBS
|
| Lab |
Tisa Lab
|
| Street address |
46 College Rd
|
| City |
Durham |
| State/province |
NH |
| ZIP/Postal code |
03824 |
| Country |
USA |
| |
|
| Platform ID |
GPL19088 |
| Series (1) |
| GSE60476 |
SCBI Wild type and mutant Expression data |
|
| Relations |
| BioSample |
SAMN02996902 |
| SRA |
SRX682440 |
