|
| Status |
Public on Oct 20, 2014 |
| Title |
SCBI Wild type and mutant Expression data |
| Organism |
Serratia sp. SCBI |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: To compare RNASeq data of wild type and mutants under standard growth conditions (Stationary Phase)28C for 18 h. The mutants were found defective in genes encoding the following proteins: an alkaline metalloprotease secretion protein AprE, GidA, and a PIN domain protein. RNA-seq analysis provided insight into how inactivation of AprE, GidA and a PIN-domain protein influences global gene expression
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| |
|
| Overall design |
mRNA profiles of wild type and mutants were generated by deep sequencing and mapped to SCBI genome by CLC Gemonic Workstation. The transcriptome profiles of the mutants were compared to the wild type.
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| |
|
| Contributor(s) |
Tisa LS, Petersen L |
| Citation(s) |
25182493 |
| |
| Submission date |
Aug 18, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Louis S Tisa |
| E-mail(s) |
[email protected]
|
| Phone |
603-862-2442
|
| Organization name |
University of New Hampshire
|
| Department |
MCBS
|
| Lab |
Tisa Lab
|
| Street address |
46 College Rd
|
| City |
Durham |
| State/province |
NH |
| ZIP/Postal code |
03824 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19088 |
Illumina HiSeq 2000 (Serratia sp. SCBI) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA258378 |
| SRA |
SRP045567 |
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