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Sample GSM124784 Query DataSets for GSM124784
Status Public on Dec 06, 2006
Title S72_NG
Sample type genomic
 
Channel 1
Source name S72
Organism Homo sapiens
Characteristics single female genomic DNA
Biomaterial provider anonymous normal female donor
Extracted molecule genomic DNA
Extraction protocol QIAamp DNA Blood Maxi Kit (QIAGEN Inc.)
Label cyanine 3
 
Channel 2
Source name Mref
Organism Homo sapiens
Characteristics single male reference genomic DNA
Biomaterial provider anonymous normal male donor
Extracted molecule genomic DNA
Extraction protocol QIAamp DNA Blood Maxi Kit (QIAGEN Inc.)
Label cyanine 5
 
 
Description cyanine 3 = sample
cyanine 5 = reference
Data processing Qspline normalization
 
Submission date Aug 02, 2006
Last update date Dec 06, 2006
Contact name Kendy Wong
E-mail(s) [email protected]
Phone 604-675-8000
Organization name BC Cancer Research Center
Department Cancer Genetics
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province British Columbia
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL4056
Series (1)
GSE5442 A comprehensive analysis of copy number variations in the human genome

Data table header descriptions
ID_REF
EXP_532 sample cy3 intensity in log2
REF_635 reference cy5 intensity in log2
EXP_NORM normalized sample intensity in log2
REF_NORM normalized reference intensity in log2
VALUE normalized log2(Cy3/Cy5; sample/ref); ie, (cy3 intensity in log2)-(cy5 intensity in log2)

Data table
ID_REF EXP_532 REF_635 EXP_NORM REF_NORM VALUE
1 14.93 14.29 14.76 14.44 0.32
2 15.44 15.02 15.34 15.15 0.19
3 15.49 15.18 15.41 15.28 0.12
4 13.31 12.86 13.15 12.98 0.17
5 11.01 11.16 11.01 11.17 -0.15
6 12.02 12.37 11.96 12.46 -0.50
7 14.94 14.70 14.78 14.85 -0.07
8 13.53 13.58 13.36 13.72 -0.35
9 14.94 14.79 14.78 14.94 -0.15
10 15.33 15.07 15.21 15.19 0.02
11 13.25 13.02 13.09 13.15 -0.06
12 15.33 15.32 15.22 15.41 -0.19
13 13.64 13.51 13.48 13.65 -0.17
14 13.93 14.13 13.77 14.27 -0.50
15 13.80 13.87 13.64 14.02 -0.37
16 14.49 14.46 14.33 14.60 -0.27
17 15.41 15.46 15.31 15.54 -0.22
18 15.37 15.32 15.26 15.41 -0.14
19 13.97 14.27 13.80 14.41 -0.60
20 10.97 11.10 10.97 11.11 -0.13

Total number of rows: 389027

Table truncated, full table size 13785 Kbytes.




Supplementary data files not provided

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