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Platform GPL4056 Query DataSets for GPL4056
Status Public on Dec 06, 2006
Title BCCRC Lam NG_OID3949_389027 oligo array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen Systems, Inc.
Manufacture protocol NimbleGen's photo deprotection chemistry with its proprietary Maskless Array Synthesizer system
 
 
Contributor(s) Wong KK, deLeeuw RJ, Dosanjh NS, Kimm LR, Cheng Z, Horsman DE, MacAulay C, Ng RT, Brown CJ, Eichler EE, Lam WL
Submission date Aug 02, 2006
Last update date Dec 06, 2006
Contact name Kendy Wong
E-mail(s) [email protected]
Phone 604-675-8000
Organization name BC Cancer Research Center
Department Cancer Genetics
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province British Columbia
ZIP/Postal code V5Z 1L3
Country Canada
 
Samples (5) GSM124782, GSM124783, GSM124784, GSM124805, GSM124808
Series (1)
GSE5442 A comprehensive analysis of copy number variations in the human genome

Data table header descriptions
ID
PROBE_ID NimbleGen Probe Identifier
CHROMOSOME chromosome that the probe is located on
RANGE_GB chromosome accession number.version
RANGE_START the start position (relative to the RANGE_GB accession)
RANGE_END the end position (relative to the RANGE_GB accession)
RANGE_STRAND forward
BUILD Human genome build (hg17/NCBI Build 35)
PROBE_SEQUENCE Sequence of probe

Data table
ID PROBE_ID CHROMOSOME RANGE_GB RANGE_START RANGE_END RANGE_STRAND BUILD PROBE_SEQUENCE
1 CHR0100P000357737 chr01 NC_000001.8 357737 357786 FORWARD hg17 AGCTTCCAGTTAAGGTGACATTGAAGCCAAGTCCTGAAAGATGAGGAAGA
2 CHR0100P000359612 chr01 NC_000001.8 359612 359662 FORWARD hg17 TCATCTCAACAACATCCCCAAATGCATTCTTACCATGCTGGAGATCCCAAA
3 CHR0100P000361579 chr01 NC_000001.8 361579 361643 FORWARD hg17 TGCTTCTCTGATGATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATGTCA
4 CHR0100P000363454 chr01 NC_000001.8 363454 363511 FORWARD hg17 TAGTCCCATATTCTCTAGAGTTCTCTTTACTCTGTGCTAGCCAATCTCTCATTATGCT
5 CHR0100P000365329 chr01 NC_000001.8 365329 365373 FORWARD hg17 CTCTTGCCTCCCAGGGGCTTTTTCCAGGCCCAGCTCTTGCCTCAT
6 CHR0100P000367204 chr01 NC_000001.8 367204 367248 FORWARD hg17 GTGGGTCTGAAGAGCTTGGTTGCAGAAACTTTGGGGTCTACAAAC
7 CHR0100P000369079 chr01 NC_000001.8 369079 369123 FORWARD hg17 CACCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCGGTCTCA
8 CHR0100P000370954 chr01 NC_000001.8 370954 370998 FORWARD hg17 CAGGGGCTGCAAAGTGGCCTGGAGCTCCATGCTGAGTAGAAGGCT
9 CHR0100P000372838 chr01 NC_000001.8 372838 372892 FORWARD hg17 CTTTCCTTCTCAAACTCCCATAACCTGACAATGGTTTGCTTAATGGTGTCTTGTT
10 CHR0100P000374761 chr01 NC_000001.8 374761 374817 FORWARD hg17 GAAGCTGGTTAGGTGGAGAAATTTATTTACCATAGTCTTGCTTGTGGATCCAGTAGT
11 CHR0100P000376843 chr01 NC_000001.8 376843 376900 FORWARD hg17 TTTTAAATATATAATCCACTGCCTACTGGCCTTCAAGGTTTCTGCCGAGAAATCAGCT
12 CHR0100P000378804 chr01 NC_000001.8 378804 378862 FORWARD hg17 CCTCTTTCATTCCACAAACCTGTATTGACTACATCTAAGTTCTAAATGGTGCACTGGAT
13 CHR0100P000380859 chr01 NC_000001.8 380859 380916 FORWARD hg17 AGGGAAAAGACCTTTTTCTTTCTTTCAGTCTTCAATGATTCACTGCTTCATCTCGCTC
14 CHR0100P000382843 chr01 NC_000001.8 382843 382905 FORWARD hg17 TTCTTATTATGGTACTCTTCTAGAGATTTGGCTTGCATCTGTGAATAAGCCAGGACATCTTCA
15 CHR0100P000385196 chr01 NC_000001.8 385196 385252 FORWARD hg17 GTGAACTAAAATCAAGTTGTCGACAGGCATGTTTCTTTATGGTGGCTAGGGTAGAAT
16 CHR0100P000387167 chr01 NC_000001.8 387167 387231 FORWARD hg17 AACAAGGATTATAATCTGAGATATTTGTGCTATGATCAATCATAGGTGCATCCCAAGAGGTTGAG
17 CHR0100P000389042 chr01 NC_000001.8 389042 389104 FORWARD hg17 TCCTCCTGCTCTCTTACTTTCAGTGTGTCTCAGTATGTCTGCTCAATATGTCATCTTAAATTT
18 CHR0100P000390917 chr01 NC_000001.8 390917 390966 FORWARD hg17 CAGGAATAAAGAACAGGTACAAAGGTCAGGTTCTGGGAAGAGCTTGTCTT
19 CHR0100P000392826 chr01 NC_000001.8 392826 392882 FORWARD hg17 TTATATCATTCCAGGCAAGCGTTTTCTAACTCTCCCATCAGAATATGACTTTGGTGC
20 CHR0100P000394701 chr01 NC_000001.8 394701 394745 FORWARD hg17 GGATCTCCAGACAGAAGTTTGCTGCAGGGGTGAGGTCTTCATGGA

Total number of rows: 389027

Table truncated, full table size 49277 Kbytes.




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