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Sample GSM121445 Query DataSets for GSM121445
Status Public on Feb 05, 2007
Title mouse hippocampus, cox-2 knockout, rep1
Sample type RNA
 
Source name Hippocampus COX-2 KO
Organism Mus musculus
Characteristics Genotype: COX-2 KO
Age: 12 weeks of age
Treatment protocol Mice were euthanized with pentobarbital overdose, decapitated and brain was frozen on dry ice after dissection into Cerebral cortex and hippocampus. Samples were stored at -80C until usage
Growth protocol 12/12 light cycle, ad libitum food
Extracted molecule total RNA
Extraction protocol Extraction of total RNA was performed using the Qiagen Rneasy Lipid tissue extraction kit according to the manufacturer's instructions.
Label 33P
Label protocol P33 labelled cDNA was prepared as described using the protocol found at http://www.grc.nia.nih.gov/branches/rrb/dna/dna.htm
 
Hybridization protocol Samples were hybridized to custom nylon cDNA array. Details of hybridization protocol can be found at http://www.grc.nia.nih.gov/branches/rrb/dna/dna.htm
Scan protocol Arrays apposed to phosphoimager plate and scanned according to protocol found at http://www.grc.nia.nih.gov/branches/rrb/dna/dna.htm
Description mouse hippocampus from COX-2 knockout
Data processing The data were analyzed as described at http://www.grc.nia.nih.gov/branches/rrb/dna/dna.htm. Data are presented as z-ratios
 
Submission date Jul 18, 2006
Last update date Jan 31, 2007
Contact name Christopher Dennis Toscano
E-mail(s) [email protected]
Phone 301-594-3890
Fax 301-402-0074
Organization name National Institutes of Health
Department National Institute on Aging
Lab Brain Physiology and Metabolism Section
Street address 9 Memorial Drive Room 1S126
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL4006
Series (1)
GSE5342 Expression data from Cerebral Cortex or Hippocampus of COX-1 or COX-2 null mice

Data table header descriptions
ID_REF Sample Identifier
VALUE z-normalized value of the raw data

Data table
ID_REF VALUE
1 0.043620083
2 -0.086886073
3 0.102862511
4 -0.098424722
5 0.408899677
6 1.713493421
7 0.590306789
8 0.458751366
9 0.035507389
10 -0.596097651
11 -0.206813977
12 0.384654336
13 2.676433698
14 0.58468042
15 -0.104937261
16 -0.083909187
17 -0.455154237
18 -0.147061774
19 -0.283157226
20 0.148339839

Total number of rows: 16896

Table truncated, full table size 292 Kbytes.




Supplementary file Size Download File type/resource
GSM121445_a.gel.gz 6.6 Mb (ftp)(http) GEL
GSM121445_b.gel.gz 6.8 Mb (ftp)(http) GEL

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