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Sample GSM1039606 Query DataSets for GSM1039606
Status Public on May 26, 2013
Title GMP_CB5
Sample type RNA
 
Source name human cord blood progenitor cells
Organism Homo sapiens
Characteristics sorted cell type: granulocyte-monocyte progenitors (GMP)
cell surface expression: Lin- CD34+ CD38+ CD10- CD7- CD135+ CD45RA+
Treatment protocol Lineage-depleted cord blood cells were thawed and flow-sorted.
Extracted molecule total RNA
Extraction protocol RNA was extracted from 2,000-5,000 sorted cells with Trizol reagent.
Label biotin
Label protocol Biotin.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Scanned on a BeadArrayâ„¢ Reader using BeadScan software (v3.2).
Data processing The data were normalized using quantile normalization in R (v2.12.1).
 
Submission date Nov 20, 2012
Last update date May 26, 2013
Contact name Elisa Laurenti
Organization name University of Cambridge
Department Haematology
Lab Laurenti laboratory
Street address Jeffrey Cheah Biomedical Centre
City Cambridge
ZIP/Postal code CB2 0AW
Country United Kingdom
 
Platform ID GPL14951
Series (1)
GSE42414 The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment.

Data table header descriptions
ID_REF
VALUE Quantile normalized and log2 transformed.
DetectionPval

Data table
ID_REF VALUE DetectionPval
ILMN_1762337 6.743635958 0.2551724
ILMN_2055271 9.228243384 0
ILMN_2383229 9.698964554 0
ILMN_1806310 6.101109001 0.5724138
ILMN_1779670 6.761266885 0.2517241
ILMN_1717783 6.021558378 0.6448276
ILMN_1814316 11.2107308 0
ILMN_2359168 11.40333726 0
ILMN_1731507 6.267457624 0.4758621
ILMN_1787689 7.836600926 0.03793104
ILMN_3241953 7.819653761 0.03793104
ILMN_1745607 9.148245827 0
ILMN_2136495 8.679295697 0
ILMN_1668111 5.344511011 0.9862069
ILMN_2295559 6.132517169 0.5586207
ILMN_1735045 6.277931384 0.4724138
ILMN_1680754 8.05569594 0.01034483
ILMN_2375184 6.036811997 0.6310345
ILMN_1659452 7.956987964 0.02413793
ILMN_1767388 12.79761576 0

Total number of rows: 29331

Table truncated, full table size 852 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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