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Sample GSM1015 Query DataSets for GSM1015
Status Public on Feb 12, 2002
Title swi1 rich medium experiment 3
Sample type RNA
 
Channel 1
Source name swi1 deletion (YPS1)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description swi1, YPD (d), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f67swi1
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 72 38 280 372 351 80 21 30 501 531 .855 -100 .636 68 70 .798 .559 1.254 1.789 2.498 982 208 49 65 103 119 .839
2 71 39 88 138 115 69 23 32 165 197 .932 -100 .978 49 47 .765 .533 1.307 1.875 1.098 979 208 47 63 120 136 .907
3 55 40 308 231 208 43 23 32 298 330 .826 0 -.048 .626 72 72 1.481 1.034 .675 .968 .625 915 202 49 65 141 157 -.048
4 58 40 56 60 38 43 22 31 54 85 .7 0 -.052 .643 72 63 1.474 1.037 .679 .964 .683 792 208 49 65 156 172 -.052
5 192 48 484 369 341 173 28 40 487 527 .728 -100 .654 89 92 1.419 .994 .705 1.006 .594 700 300 48 69 173 194 .009
6 279 51 331 275 245 300 30 42 350 392 .762 -100 .619 91 90 1.351 .946 .74 1.057 .824 694 208 50 66 189 205 .081
7 197 44 588 1116 1090 243 26 37 1557 1594 .709 -100 .958 60 62 .539 .378 1.854 2.648 1.613 792 208 50 66 206 222 1.405
8 57 39 -2 22 57 22 31 31 .226 0 1.167 8 14 0 .204 853 208 50 66 223 239
9 52 38 21 49 21 30 30 -.072 0 .765 7 16 0 -.073 812 202 50 66 243 259
10 43 38 -2 22 29 22 31 31 .008 0 .632 8 15 0 .007 757 208 50 66 258 274
11 47 39 2 28 4 35 24 34 6 40 .299 0 1.585 1.129 9 15 .5 .333 2 3 .927 799 208 50 66 275 291 1.585
12 72 40 5 29 5 82 24 34 7 41 .53 0 .485 1 10 12 1 .714 1 1.4 .461 756 208 51 67 293 309 .485
13 189 41 -2 23 -1 228 24 34 -2 32 .118 0 1.167 6 12 0 .099 751 208 51 67 310 326
14 192 43 7 71 45 232 26 37 64 101 .583 0 3.193 1.538 8 14 .156 .109 6.429 9.143 3.222 751 208 51 67 327 343 3.193
15 46 41 -2 23 -2 37 25 35 -3 32 .071 0 1.25 6 12 0 .058 754 208 51 67 344 360
16 45 42 -2 23 -1 41 24 34 -2 32 .057 0 .714 5 12 0 .057 756 208 51 67 362 378
17 48 42 46 111 87 38 24 34 124 158 .742 -100 1.438 17 28 .529 .371 1.891 2.696 1.486 751 208 51 67 379 395 1.431
18 71 42 58 123 98 73 25 35 140 175 .873 -100 .667 26 30 .592 .414 1.69 2.414 1.761 789 208 51 67 396 412 1.271
19 70 42 -1 21 -3 65 24 34 -4 30 .495 0 1.111 9 7 0 .359 779 208 51 67 414 430
20 48 42 1 28 3 32 25 35 5 40 .734 0 2.322 .533 5 10 .333 .2 3 5 1.066 741 208 51 67 431 447 2.322

Total number of rows: 8832

Table truncated, full table size 1022 Kbytes.




Supplementary data files not provided
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