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Sample GSM1013 Query DataSets for GSM1013
Status Public on Feb 12, 2002
Title snf2 rich medium experiment 2
Sample type RNA
 
Channel 1
Source name snf2 deletion (FY31)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description snf2, YPD (c), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f64snf2
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 549 545 36 1860 -141 2024 2001 2198 -155 2043 .419 -100 2.063 4 2 -3.917 1.466 1014 208 50 66 105 121
2 556 554 -46 1869 -181 2048 2050 2252 -199 2053 .766 -100 2.636 1 1 0 3.17 928 208 48 64 122 138
3 571 562 96 1834 -239 2098 2073 2278 -263 2015 .56 -100 3.719 12 9 -2.49 3.229 833 208 50 66 139 155
4 623 581 67 2281 152 2228 2129 2339 167 2506 .635 -100 3.707 6 6 .441 .401 2.269 2.493 2.092 792 208 50 66 155 171 1.318
5 682 638 310 2143 -112 2353 2255 2478 -124 2354 .685 -100 1.194 45 9 -.361 2.385 698 331 49 70 172 193
6 635 599 -9 1565 -540 2156 2105 2313 -594 1719 .622 -100 1.681 12 5 0 2.252 723 208 51 67 191 207
7 579 561 -26 1847 -123 1998 1970 2164 -135 2029 .227 -100 3.054 0 0 0 .811 792 208 52 68 209 225
8 550 540 -27 1807 -101 1956 1908 2096 -111 1985 .256 -100 1.31 0 0 0 .464 797 208 52 68 226 242
9 547 539 -29 1780 -91 1918 1871 2056 -100 1956 .226 -100 1.769 0 0 0 .384 778 208 52 68 245 261
10 549 539 -17 1779 -71 1911 1850 2032 -78 1954 .003 -100 1.061 0 0 0 .006 775 208 52 68 261 277
11 546 537 -46 1706 -107 1874 1813 1992 -118 1874 .127 -100 .569 0 0 0 .291 785 208 52 68 278 294
12 542 530 -18 1731 -61 1849 1792 1969 -67 1902 .112 -100 2.878 0 0 0 .201 791 208 52 68 296 312
13 541 523 -62 1529 -240 1821 1769 1943 -263 1680 .671 -100 2.143 0 0 0 2.133 791 208 52 68 313 329
14 540 527 -23 1675 -85 1810 1760 1934 -94 1840 .149 -100 .808 0 0 0 .295 797 208 52 68 330 346
15 544 535 -24 1661 -108 1809 1769 1943 -118 1825 .355 -100 1.714 0 0 0 .872 798 208 52 68 348 364
16 542 532 -30 1627 -121 1784 1748 1920 -133 1787 .209 -100 1.717 0 0 0 .365 780 208 52 68 365 381
17 536 530 -16 1635 -97 1756 1732 1903 -107 1796 .095 -100 1.539 0 0 0 .175 790 208 52 68 382 398
18 542 534 -34 1627 -87 1736 1714 1883 -96 1787 .06 -100 1.444 0 0 0 .097 798 208 52 68 400 416
19 535 527 -13 1611 -74 1697 1685 1851 -81 1770 -.095 -100 1.325 0 0 0 -.167 769 208 52 68 417 433
20 532 524 -22 1541 -101 1656 1642 1804 -111 1693 .189 -100 1.635 0 0 0 .35 778 208 52 68 435 451

Total number of rows: 8832

Table truncated, full table size 1020 Kbytes.




Supplementary data files not provided
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