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Sample GSM1011 Query DataSets for GSM1011
Status Public on Feb 12, 2002
Title snf2 rich medium experiment 1
Sample type RNA
 
Channel 1
Source name snf2 deletion (FY31)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description snf2, YPD (a) FY2 vs. FY31
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = swi2a
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 1518 1384 4536 5919 5343 672 576 702 6516 7218 .867 0 .523 1.091 53 55 .849 .696 1.178 1.437 1.024 1365 45 43 51 82 90
2 1511 1392 4740 5893 5309 696 584 712 6474 7186 .885 0 .45 1.308 55 62 .893 .732 1.12 1.366 .983 1237 45 43 51 93 101
3 1502 1400 3094 3968 3376 689 592 721 4118 4839 .888 0 .412 1.115 53 62 .916 .751 1.091 1.331 .921 1204 45 43 51 103 111
4 1394 1368 33 581 -3 611 584 712 -4 708 .313 0 .613 4 0 -.091 .148 1198 45 43 51 115 123
5 1396 1368 677 771 187 612 584 712 228 940 .588 0 -1.57 .35 37 20 3.62 2.969 .276 .337 .18 1198 45 43 51 126 134
6 1532 1408 658 1084 468 687 616 751 570 1321 .782 0 -.207 .701 22 44 1.406 1.154 .711 .866 .508 1189 45 43 51 137 145
7 1559 1432 25767 31236 30604 708 632 770 37322 38092 0 0 .535 1.135 88 95 .842 .69 1.188 1.448 0 1167 45 43 52 147 156
8 1589 1464 1190 2010 1370 718 640 780 1671 2451 .878 0 .49 1 23 30 .869 .712 1.151 1.404 1.312 1141 69 42 52 158 168
9 1638 1488 26 628 -20 745 648 790 -25 765 .466 0 .429 2 1 -.769 .062 1124 69 42 52 169 179
10 1575 1496 17 676 20 709 656 800 24 824 .43 0 .497 .767 0 4 .85 .708 1.176 1.412 .283 1108 69 42 52 180 190
11 1616 1528 -15 701 37 761 664 809 45 854 .331 0 .9 1 5 0 .235 1108 69 42 52 191 201
12 1710 1552 163 843 163 838 680 829 199 1028 .509 0 .288 .697 5 20 1 .819 1 1.221 .307 1117 69 42 52 202 212
13 1689 1544 15259 15458 14794 842 664 809 18042 18851 0 0 .242 .97 73 85 1.031 .846 .97 1.182 0 1153 69 42 52 213 223
14 1671 1552 4979 4668 4004 826 664 809 4883 5692 .881 0 -.028 .807 71 80 1.244 1.02 .804 .981 .723 1153 45 43 52 225 234
15 1608 1504 1298 1056 424 757 632 770 517 1287 .893 0 -1.328 .369 44 47 3.061 2.511 .327 .398 .323 1153 69 42 52 236 246
16 1484 1456 895 1210 594 661 616 751 724 1475 .926 0 -.306 .596 30 34 1.507 1.236 .664 .809 .625 1138 69 42 52 247 257
17 1458 1440 1049 1377 761 637 616 751 928 1679 .898 0 -.177 .671 39 44 1.378 1.13 .725 .885 .611 1132 69 42 52 258 268
18 1447 1424 715 761 145 640 616 751 177 928 .582 0 -2.014 .22 48 17 4.931 4.04 .203 .248 .149 1132 45 43 52 269 278
19 1477 1448 1266 1564 916 670 648 790 1117 1907 .861 0 -.181 .687 37 50 1.382 1.133 .724 .882 .596 1132 69 42 52 280 290
20 1524 1504 1085 1124 444 726 680 829 541 1370 .698 0 -1.004 .437 50 50 2.444 2.006 .409 .499 .302 1124 69 42 52 291 301

Total number of rows: 6400

Table truncated, full table size 749 Kbytes.




Supplementary data files not provided
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