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Sample GSM1009 Query DataSets for GSM1009
Status Public on Feb 12, 2002
Title snf2 minimal medium experiment 3
Sample type RNA
 
Channel 1
Source name snf2 deletion (FY31)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description snf2, minimal (d), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f62snf2
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 265 116 421 767 671 382 96 105 737 842 .936 -100 1.115 58 60 .627 .571 1.594 1.751 1.787 1001 208 62 78 109 125 .808
2 265 110 185 416 326 403 90 98 359 457 .631 -100 1.232 16 27 .567 .515 1.762 1.941 1.265 949 208 60 76 127 143 .956
3 204 105 388 541 460 209 81 89 505 594 .823 0 .38 1.113 67 73 .843 .768 1.186 1.302 1.134 839 202 62 78 146 162 .38
4 453 108 254 404 320 653 84 92 351 443 .93 -100 .996 36 39 .794 .724 1.26 1.382 1.381 740 208 62 78 161 177 .467
5 431 112 642 757 672 584 85 93 738 831 .887 -100 1.013 97 99 .955 .87 1.047 1.15 1.2 701 345 61 82 177 198 .201
6 198 99 236 340 271 235 69 75 298 373 .772 -100 .966 42 45 .871 .792 1.148 1.263 .894 758 208 63 79 198 214 .337
7 168 94 2 69 4 188 65 71 4 75 .723 0 1 1.381 1 6 .5 .5 2 2 .707 789 208 63 79 215 231 1
8 163 93 -8 57 -4 176 61 67 -5 62 -.101 0 .8 0 0 0 -.077 788 208 63 79 232 248
9 102 91 2 60 4 76 56 61 4 65 .468 0 1 .6 3 4 .5 .5 2 2 .479 782 202 63 79 250 266 1
10 102 91 8 68 12 66 56 61 13 74 .794 0 .7 .805 4 7 .667 .615 1.5 1.625 .915 775 208 63 79 265 281 .7
11 106 89 7 62 7 91 55 60 8 68 .751 0 .193 .515 4 6 1 .875 1 1.143 .603 797 208 63 79 283 299 .193
12 108 87 266 359 307 90 52 57 337 394 .861 -100 .929 19 24 .866 .789 1.154 1.267 .887 811 208 63 79 300 316 .341
13 102 87 -2 49 -3 73 52 57 -4 53 .141 0 .727 2 4 0 .151 817 208 63 79 317 333
14 94 86 157 274 227 60 47 51 250 301 .736 -100 .949 14 21 .692 .628 1.446 1.592 .853 802 208 63 79 335 351 .671
15 87 86 -5 44 -1 47 45 49 -1 48 -.039 0 .909 0 7 0 -.029 797 208 63 79 352 368
16 86 85 2 47 2 46 45 49 2 51 .387 0 0 1 4 10 1 1 1 1 .216 832 208 63 79 369 385 0
17 87 85 -2 45 47 45 49 49 .177 0 .909 2 2 0 .119 820 208 63 79 387 403
18 90 84 14 64 20 49 44 48 22 70 .764 -100 .917 7 10 .7 .636 1.429 1.571 1.42 790 208 63 79 404 420 .652
19 89 84 15 74 29 50 45 49 32 81 .912 -100 .771 4 14 .517 .469 1.933 2.133 1.391 795 208 63 79 421 437 1.093
20 87 83 -4 40 -5 47 45 49 -6 43 .024 0 .524 2 2 0 .015 792 208 63 79 439 455

Total number of rows: 8832

Table truncated, full table size 1025 Kbytes.




Supplementary data files not provided
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