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Sample GSM1008 Query DataSets for GSM1008
Status Public on Feb 12, 2002
Title swi1 minimal medium experiment 3
Sample type RNA
 
Channel 1
Source name swi1 deletion (YPS1)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description swi1, minimal (d), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f63swi1
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 54 53 165 163 134 31 29 33 154 187 .888 0 -.1 .764 74 71 1.231 1.071 .812 .933 .856 990 208 61 77 114 130 -.1
2 53 52 8 37 8 31 29 33 9 42 .354 0 .17 .75 13 25 1 .889 1 1.125 .272 962 208 59 75 132 148 .17
3 56 52 279 259 230 32 29 33 264 297 .836 0 -.08 .85 76 79 1.213 1.057 .824 .946 .686 837 202 61 77 151 167 -.08
4 66 53 42 57 28 40 29 33 32 65 .579 0 -.392 .641 62 63 1.5 1.313 .667 .762 .482 776 208 61 77 166 182 -.392
5 99 57 407 359 328 66 31 35 377 412 .805 -100 .765 92 94 1.241 1.08 .806 .926 .735 723 338 60 81 183 204 -.11
6 116 56 120 121 87 73 34 39 100 139 .739 -100 .637 90 83 1.379 1.2 .725 .833 .74 713 208 62 78 203 219 -.263
7 83 53 27 51 17 51 34 39 19 58 .872 0 -.507 .619 17 19 1.588 1.421 .63 .704 .522 777 208 62 78 220 236 -.507
8 50 48 -3 31 35 31 35 35 -.016 0 1.176 4 10 0 -.013 764 208 62 78 237 253
9 53 46 27 -1 37 28 32 -1 31 -.035 0 .75 5 7 0 -.028 728 202 62 78 255 271
10 55 47 27 -2 43 29 33 -2 31 .016 0 .556 8 8 0 .011 727 208 62 78 270 286
11 56 47 28 -1 52 29 33 -1 32 .033 0 .647 5 9 0 .029 760 208 62 78 287 303
12 56 47 29 53 29 33 33 .067 0 1.091 6 12 0 .056 771 208 62 78 305 321
13 51 48 30 1 36 29 33 1 34 -.085 0 .8 3 13 0 -.069 755 208 62 78 322 338
14 49 47 -1 29 32 29 33 33 .072 0 .947 6 10 0 .053 760 208 62 78 339 355
15 48 45 -1 27 -2 34 29 33 -2 31 .095 0 .6 4 10 0 .083 759 208 62 78 357 373
16 51 47 28 -2 37 30 34 -2 32 -.105 0 1.091 5 6 0 -.083 779 208 62 78 374 390
17 59 51 3 36 1 43 35 40 1 41 .161 0 -1.585 .63 10 12 3 3 .333 .333 .135 779 208 62 78 391 407 -1.585
18 60 54 39 -1 45 40 45 -1 44 -.056 0 .842 4 2 0 -.041 760 208 62 78 408 424
19 52 50 3 41 5 38 36 41 6 47 -.046 0 1 .875 6 16 .6 .5 1.667 2 -.042 762 208 62 78 426 442 1
20 49 48 -3 34 2 34 32 36 3 39 -.053 0 .667 6 13 0 -.043 755 208 62 78 443 459

Total number of rows: 8832

Table truncated, full table size 1010 Kbytes.




Supplementary data files not provided
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