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Sample GSM1006 Query DataSets for GSM1006
Status Public on Feb 12, 2002
Title swi1 minimal medium experiment 2
Sample type RNA
 
Channel 1
Source name swi1 deletion (YPS1)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description swi1, minimal (c), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f61swi1
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 114 111 217 321 192 131 129 157 234 391 .925 0 .109 .931 64 55 1.13 .927 .885 1.078 .985 1001 208 67 83 110 126 .109
2 109 106 8 122 5 120 117 142 6 148 .391 0 -.415 .804 8 6 1.6 1.333 .625 .75 .504 935 208 65 81 128 144 -.415
3 107 102 366 452 339 121 113 137 414 551 .912 0 .178 .936 64 62 1.08 .884 .926 1.131 .855 845 208 67 83 145 161 .178
4 108 101 17 114 5 115 109 132 7 139 .466 0 -1.28 .81 13 6 3.4 2.429 .294 .412 .487 815 208 67 83 162 178 -1.28
5 147 107 666 745 634 157 111 135 773 908 .778 0 .215 .933 95 95 1.05 .862 .952 1.161 .737 681 337 67 88 179 200 .215
6 143 104 124 263 152 158 111 135 185 320 .858 -100 1.156 47 45 .816 .67 1.226 1.492 1.074 689 208 69 85 199 215 .577
7 103 98 3 114 9 117 105 128 11 139 .12 0 1.874 1.391 1 4 .333 .273 3 3.667 .132 752 208 69 85 216 232 1.874
8 97 94 3 96 -2 107 98 119 -2 117 .186 -100 .564 1 0 -.667 .058 744 208 69 85 233 249
9 144 95 -4 89 -5 192 94 114 -6 108 .058 0 .833 1 0 0 .045 746 208 69 85 250 266
10 152 95 33 185 92 203 93 113 112 225 .554 -100 1.211 6 8 .359 .295 2.788 3.394 1.488 758 208 69 85 266 282 1.763
11 145 94 -2 91 -2 194 93 113 -3 110 -.115 0 .9 1 1 0 -.093 776 208 69 85 283 299
12 115 92 -2 88 -3 139 91 110 -3 107 .086 0 .741 2 1 0 .076 795 208 69 85 300 316
13 103 93 -3 88 -4 117 92 112 -5 107 -.037 0 1.053 1 0 0 -.029 792 208 69 85 318 334
14 96 93 -4 95 2 101 93 113 2 115 .112 0 1 2 3 0 .113 776 208 69 85 335 351
15 93 91 -3 93 -1 98 94 114 -1 113 -.003 0 .903 1 0 0 -.003 770 208 69 85 352 368
16 95 90 -5 88 -7 103 95 115 -8 107 .129 0 .667 0 0 0 .114 795 208 69 85 369 385
17 94 91 -6 90 -1 97 91 110 -1 109 .022 0 1.188 1 2 0 .021 792 208 69 85 387 403
18 93 91 -6 81 -8 95 89 108 -10 98 .158 0 1 0 0 0 .142 776 208 69 85 404 420
19 91 91 -2 83 -3 89 86 104 -3 101 .032 0 .592 3 0 0 .026 770 208 69 85 421 437
20 93 87 -2 81 -1 88 82 100 -2 98 .157 -100 .954 2 5 0 .124 795 208 69 85 438 454

Total number of rows: 8832

Table truncated, full table size 1027 Kbytes.




Supplementary data files not provided
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