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Series GSE85502 Query DataSets for GSE85502
Status Public on May 02, 2017
Title Genome-wide profiling of H3K27me3 in Drosophila primary spermatocytes.
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary YFP-tagged primary spermatocytes were sorted by FACS, then ChIP together with microarray analysis was used to generate a genome-wide map for the H3K27me3 histone mark.
 
Overall design We performed two biological replicates with a Cy3/Cy5 dye swap. Input chromatin was used as the reference control to assay ChIP enrichment.
 
Contributor(s) El-Sharnouby SM, Fischer B, White RA
Citation(s) 28282436
Submission date Aug 11, 2016
Last update date Jul 12, 2017
Contact name Rob White
E-mail(s) [email protected]
Organization name University of Cambridge
Department Physiology, Development and Neuroscience
Street address Downing Street
City Cambridge
ZIP/Postal code CB23DY
Country United Kingdom
 
Platforms (1)
GPL15057 NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DM_5_Catalog_tiling_HX1; DesignID 6725]
Samples (2)
GSM2267928 H3K27me3_primaryspermatocytes_rep1
GSM2267929 H3K27me3_primaryspermatocytes_rep2
This SubSeries is part of SuperSeries:
GSE85504 Regions of very low H3K27me3 partition the Drosophila genome into topological domains
Relations
BioProject PRJNA338724

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85502_H3K27me3_HMM_D_state.bed.gz 11.1 Kb (ftp)(http) BED
GSE85502_H3K27me3_HMM_E_state.bed.gz 11.1 Kb (ftp)(http) BED
GSE85502_H3K27me3_PS_rep1rep2_medianscale-quant-all_1kb-tiled.bedgraph.gz 771.2 Kb (ftp)(http) BEDGRAPH
GSE85502_H3K27me3_PS_rep1rep2_medianscale-quant-all_oligoscores.sgr.gz 11.3 Mb (ftp)(http) SGR
GSE85502_H3K27me3_primaryspermatocytes_GEOmatrix.txt.gz 11.3 Mb (ftp)(http) TXT
GSE85502_RAW.tar 280.3 Mb (http)(custom) TAR (of PAIR)
Processed data are available on Series record

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