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Status
Public on Dec 23, 2011
Title
NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DM_5_Catalog_tiling_HX1; DesignID 6725]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Drosophila melanogaster Manufacturer
NimbleGen
Manufacture protocol
See manufacturer's web site www.nimblegen.com
Catalog number
05542308001
Description
Platform annotations based on UCSC dm3 (BDGP Release 5).
Submission date
Dec 23, 2011
Last update date
Aug 10, 2016
Organization
NimbleGen Systems, Inc.
E-mail(s)
[email protected] Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (90)
GSM853693 , GSM853694 , GSM853695 , GSM853696 , GSM853697 , GSM873812
GSM873813 ,
GSM873814 ,
GSM873815 ,
GSM873816 ,
GSM873817 ,
GSM873818 ,
GSM873819 ,
GSM873820 ,
GSM873821 ,
GSM873822 ,
GSM873823 ,
GSM873824 ,
GSM873825 ,
GSM873826 ,
GSM873827 ,
GSM873828 ,
GSM873829 ,
GSM873830 ,
GSM873831 ,
GSM873832 ,
GSM873904 ,
GSM873905 ,
GSM873906 ,
GSM873907 ,
GSM873908 ,
GSM873909 ,
GSM873910 ,
GSM873911 ,
GSM873912 ,
GSM873913 ,
GSM873914 ,
GSM873915 ,
GSM873916 ,
GSM873917 ,
GSM873918 ,
GSM873919 ,
GSM873920 ,
GSM873921 ,
GSM873922 ,
GSM873923 ,
GSM925129 ,
GSM925130 ,
GSM981594 ,
GSM981595 ,
GSM1017063 ,
GSM1017064 ,
GSM1017065 ,
GSM1017088 ,
GSM1017096 ,
GSM1057215 ,
GSM1057216 ,
GSM1057217 ,
GSM1178929 ,
GSM1178930 ,
GSM1178931 ,
GSM1178932 ,
GSM1178933 ,
GSM1178934 ,
GSM1192169 ,
GSM1192170 ,
GSM1192171 ,
GSM1219781 ,
GSM1219782 ,
GSM1219783 ,
GSM1219784 ,
GSM1219785 ,
GSM1219786 ,
GSM1260468 ,
GSM1260469 ,
GSM1260470 ,
GSM1677121 ,
GSM1677122 ,
GSM1677123 ,
GSM2267928 ,
GSM2267929 ,
GSM4773263 ,
GSM4773264 ,
GSM4773265 ,
GSM5616116 ,
GSM5616117 ,
GSM5616118 ,
GSM5616119 ,
GSM5616120 ,
GSM5616121 Series (21)
GSE34718 DamID-based chromatin profiling of UpSET in Kc cells and chromatic accesibility evaluation in UpSET knock down Kc cells
GSE34720 UpSET Recruits HDAC Complexes and Restricts Chromatin Accessibility and Acetylation at Promoter Regions
GSE35715 ChIP-chip time-course from DmD8 cells with Pol II (Ser 2 and Ser 5 phosphorylated) antibody after 0, 10, 20, 30 40, 60 and 100 minutes Notch activation
GSE35719 ChIP-chip time-course from DmD8 cells with Su(H) antibody after 0, 10, 20, 30 40, 60 and 100 minutes Notch activation
GSE35720 ChIP-chip time-course from DmD8 cells with Pol II (Ser 2 and Ser 5 phosphorylated) antibody or Su(H) antibody after Notch activation
GSE36927 Topoisomerase II is required for proper dosage compensation in Drosophila
GSE39935 Genome-wide Polycomb localization in Drosophila whole testes and purified germline precursor cells.
GSE41425 Su(H) bound regions in Su(H) induced wing-disc hyperplasia
GSE41426 Su(H) bound regions in Nicd induced wing-disc hyperplasia
GSE41429 Notch-regulated genes in wing disc hyperplasia
GSE43132 ChIP-chip from Kc cells with Su(H) antibodies after 30 minutes Notch activation
GSE48449 Ethanol and benzyl alcohol induced H4Ac ChIP-chip in Drosophila heads
GSE49013 DamID experiment looking at Dichaete-bound regions in 2-7h old Drosophila embryos
GSE49095 The role of Dichaete in transcriptional regulation during Drosophila embryonic development
GSE50473 ChIP-chip with anti-HP1 from third instar larvae
GSE52165 Nucleosomal chromatin in the mature sperm of Drosophila melanogaster.
GSE68614 Genome wide profiling of Su(H) [CSL] binding in Drosophila melanogaster larval CNSs where Notch is hyperactive in neuroblasts for 24 hours
GSE85502 Genome-wide profiling of H3K27me3 in Drosophila primary spermatocytes.
GSE85504 Regions of very low H3K27me3 partition the Drosophila genome into topological domains
GSE157685 Identification of Esg genomic binding sites in Drosophila testes
GSE185490 Su(H) ChIP-on-chip of Notch-stimulated overgrowing Drosophila melanogaster wing imaginal discs
Data table header descriptions ID ID of oligo
SEQUENCE Sequence of the probe
CHROMOSOME Chromosomal location
RANGE_GB CHROMOSOME accession.version
SPOT_ID GENOME_RELEASE Genome release for coordinates (BDGP Release 5, April 2006)
RANGE_START Start position of oligo realtive to the RANGE_GB accession
LENGTH Length of oligo
RANGE_END End position of oligo realtive to the RANGE_GB accession
Data table ID SEQUENCE CHROMOSOME RANGE_GB SPOT_ID GENOME_RELEASE RANGE_START LENGTH RANGE_END CHR02LFS000005131
AGAGTAGTGCCAACATATTGTGATCTTCGATTTTTTGGCAACCCAAAATGGAGG
chr2L
AE014134.5 BDGP_Release5
5131
54
5185
CHR02LFS000005176
AAATGGAGGCGGACGAACGAGATGATAATGATAAGATGATTCAAAAAGACAATGCACGA
chr2L
AE014134.5 BDGP_Release5
5176
59
5235
CHR02LFS000005236
AGAGAGAGCAGAAAAGATAATTAAATTGCCCCTCATTTTCTCTGGCAAATTGTAGGG
chr2L
AE014134.5 BDGP_Release5
5236
57
5293
CHR02LFS000005281
CAAATTGTAGGGTGAATTATGATCGCGTATGCGAGAGTGGTGCCAACATATT
chr2L
AE014134.5 BDGP_Release5
5281
52
5333
CHR02LFS000005401
CGCTAATCAAAAATAAATTCCTTGCAACATAAAATAAAGCACAAAATGCCCGCTCAA
chr2L
AE014134.5 BDGP_Release5
5401
57
5458
CHR02LFS000005461
AAGGCATGAATATATAAGCTCGAACATAGAACATAGGCTTGAACATATAATGACTGCCTTTCAT
chr2L
AE014134.5 BDGP_Release5
5461
64
5525
CHR02LFS000005501
GAACATATAATGACTGCCTTTCATTCTCTATCTTATATTACCGCAAACACAAAATGACAATGCA
chr2L
AE014134.5 BDGP_Release5
5501
64
5565
CHR02LFS000005571
AGAGAGAAAGAGAGATATTCAGATTGCCTCTCATTGTCTCACCCATATTATGGGAACCAAATA
chr2L
AE014134.5 BDGP_Release5
5571
63
5634
CHR02LFS000005611
ACCCATATTATGGGAACCAAATATGAGCACGTATGCGAGAGGAGTG
chr2L
AE014134.5 BDGP_Release5
5611
46
5657
CHR02LFS000005681
TTTTGCAACCCAAAATGGCGGCGTACGAACGAGATGATAATATATTCAAATTGCC
chr2L
AE014134.5 BDGP_Release5
5681
55
5736
CHR02LFS000005736
GCTAATCAGAAGCAAGTTTATTGCAATGTTCAGTGCAGCGCAAAATGGCC
chr2L
AE014134.5 BDGP_Release5
5736
50
5786
CHR02LFS000005781
TGGCCGCTCAAGAAAAGGCTCGAATATATATTGCCTGCCTCTCATT
chr2L
AE014134.5 BDGP_Release5
5781
46
5827
CHR02LFS000005831
CTCTTTTATTACCGCAAGACCAAAATGACAATGTACAACAGAGAGAGCAAGAGAGATATT
chr2L
AE014134.5 BDGP_Release5
5831
60
5891
CHR02LFS000005901
CTCCTTGTCTCTCCCATATTATAGAGACCGAAAATGATTGCGTATGCGAGAA
chr2L
AE014134.5 BDGP_Release5
5901
52
5953
CHR02LFS000005941
CGTATGCGAGAAGAGTGCCATTGTATTGAGCTCCTCGACCCAAAA
chr2L
AE014134.5 BDGP_Release5
5941
45
5986
CHR02LFS000006011
ATTTAAAATGCCGATCATTTTCTCATCCATATAAATACTACCGAAAATGACTGTCTAA
chr2L
AE014134.5 BDGP_Release5
6011
58
6069
CHR02LFS000006051
CCGAAAATGACTGTCTAAAGGTACTCATCGACTATATTTAAATCTGTGTATTTCTGTGA
chr2L
AE014134.5 BDGP_Release5
6051
59
6110
CHR02LFS000006106
GTGAATAGATTGACCTTTGCAATTTTTAACGGCATTGTCTATTAAATTAATATAAT
chr2L
AE014134.5 BDGP_Release5
6106
56
6162
CHR02LFS000006171
TGATGAATATTTAACCGAACATTTACTTGAAATTAAATTATAAAATTGGTTAA
chr2L
AE014134.5 BDGP_Release5
6171
53
6224
CHR02LFS000006231
TGAAATCTTACTTTCAGCTAAATGGGGCTATTTTGCAAGGGTTCCATCATGACATTGGTA
chr2L
AE014134.5 BDGP_Release5
6231
60
6291
2157868 256552 Kbytes .Supplementary file Size Download File type/resource GPL15057_DM_5_Catalog_tiling_HX1.gff.gz
611.0 Kb
(ftp) (http) GFF
GPL15057_DM_5_Catalog_tiling_HX1.ncd.gz
269 b
(ftp) (http) NCD
GPL15057_DM_5_Catalog_tiling_HX1.ndf.gz
114.3 Mb
(ftp) (http) NDF
GPL15057_DM_5_Catalog_tiling_HX1.pos.gz
15.8 Mb
(ftp) (http) POS
GPL15057_DM_5_Catalog_tiling_HX1_probe_locations.gff.gz
13.0 Mb
(ftp) (http) GFF
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