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Series GSE83415 Query DataSets for GSE83415
Status Public on Jun 18, 2016
Title CD4+ T Cells Gene Expression-Based Biomarkers in Juvenile Idiopathic Arthritis (JIA)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Aim: To discovery biomarkers in JIA base on gene expression from RNA sequencing on CD4+ T Cells
Method: Paired-end Ilumina sequencing to capture gene expression of CD4+ T cells from JIA individuals with active disease and patients in clinical remission on medication.
 
Overall design RNA sequencing on CD4+T cells consist of JIA patients
 
Contributor(s) Wong LP, Jiang K, Chen Y, Jarvis J
Citation(s) 27385437
Submission date Jun 15, 2016
Last update date May 15, 2019
Contact name JAMES JARVIS
Organization name UNIVERSITY AT BUFFALO
Department PEDIATRIC
Lab JAMES JARVIS
Street address 875 ELLICOTT STREET 8026
City BUFFALO
State/province NY
ZIP/Postal code 14203
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (21)
GSM2202553 JIA patient 1_active_disease
GSM2202554 JIA patient 2_active_disease
GSM2202555 JIA patient 3_active_disease
Relations
BioProject PRJNA325833
SRA SRP076627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83415_RAW.tar 4.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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