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Series GSE77925 Query DataSets for GSE77925
Status Public on Aug 31, 2016
Title Defining the role of ZEB1 in the pathogenesis of lung cancer
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Using an in vitro model for malignant transformation of human bronchial epithelial cells (HBECs) we have found epithelial-to-mesenchymal transition (EMT) and expression of the EMT-transcription factor ZEB1 are early and critical events. Specifically, we found preexisting oncogenic mutations in TP53 and KRAS were required for HBECs to engage EMT machinery in response to microenvironmental (serum/TGFβ) or specific oncogenetic (MYC) EMT-inducing factors, which induce EMT through distinct TGFβ-dependent and vitamin D receptor (VDR)-dependent pathways, respectively, with both requiring ZEB1. Functional studies demonstrated ZEB1 causally promotes the malignant progression of HBECs and tumorigenicity of NSCLC and small cell lung cancer (SCLC) lines. Mechanistically ZEB1 directly represses ESRP1 leading to increased mesenchymal splicing of CD44, which drives a switch to CD44hi status and defines a highly transformed subpopulation. This was supported by finding ZEB1 is expressed in early-stage primary non-small cell lung cancers (NSCLC), as early as stage IB tumors, and its expression correlates with TNM stage. We conclude that: ZEB1-induced EMT and associated ESRP1 and CD44 molecular changes are important biomarkers for lung cancer pathogenesis; TGFβ and VDR are EMT chemoprevention targets; and as such, ZEB1 represents an important therapeutic target in NSCLC and SCLC.
 
Overall design Human bronchial epithelial cells (HBECs) immortalized with cdk4 and hTERT and subsequently transformed with various oncogenetic manipulations (p53 knockdown, KrasV12, cMYC and ZEB1 over-expression) and/or growth conditions (10%FBS) were profiled on Illumina HumanHT-12 V4.0 expression beadchips. All cell lines were grown in KSFM (defined, serum-free medium) except HBEC3-KTRL53(R10), which was grown in RPMI1640 with 10% FBS.
 
Contributor(s) Larsen JE, Girard L, Minna JD
Citation(s) 27500490
Submission date Feb 15, 2016
Last update date Aug 13, 2018
Contact name Luc Girard
E-mail(s) [email protected]
Organization name UT Southwestern Medical Center
Department Hamon Center for Therapeutic Oncology Research
Lab NB8.114A
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390-8593
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (10)
GSM2061439 HBEC3_pMSCV
GSM2061440 HBEC3_pSRZ_pL6Z
GSM2061441 HBEC3_ZEB1.1
Relations
BioProject PRJNA312112

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77925_RAW.tar 44.2 Mb (http)(custom) TAR (of IDAT)
GSE77925_non-normalized_data.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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