|
| Status |
Public on Nov 04, 2013 |
| Title |
TEL-AML1 (ETV6-RUNX1) in B-cells and leukemia (part 2) |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
We identified directly and indirectly regulated target genes utilizing an inducible TEL-AML1 system derived from the murine pro B-cell line BA/F3 and a monoclonal antibody directed against TEL-AML1. By integration of promoter binding identified with ChIP-on-chip, gene expression and protein output through microarray technology and stable labelling of amino acids in cell culture (SILAC), we identified directly and indirectly regulated targets of the TEL-AML1 fusion protein.
|
| |
|
| Overall design |
Bound promoter regions of immunoprecipitated TEL associated genes were first compared to input material and enrichment was calculated. The same was performed for empty vector control cell lines, also treated with the induction reagent mifepriston. Enriched promoter regions were then compared of the both sets. 3 independent replicates each (6 arrays) were performed.
|
| |
|
| Contributor(s) |
Linka Y, Ginzel S, Krüger M, Novosel A, Gombert M, Kremmer E, Harbott J, Thiele R, Borkhardt A, Landgraf P |
| Citation(s) |
24121163, 26484077 |
| |
| Submission date |
Sep 10, 2013 |
| Last update date |
Jun 07, 2019 |
| Contact name |
Pablo Landgraf |
| E-mail(s) |
[email protected]
|
| Organization name |
Heinrich-Heine University Düsseldorf
|
| Department |
Clinic of Pediatric Oncology, Hematology and Clinical Immunology
|
| Street address |
Moorenstraße 5
|
| City |
Düsseldorf |
| ZIP/Postal code |
40225 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL8943 |
2006-07-18_MM8_RefSeq_promoter |
|
| Samples (3) |
|
| This SubSeries is part of SuperSeries: |
| GSE50736 |
TEL-AML1 (ETV6-RUNX1) in B-cells and leukemia |
|
| Relations |
| BioProject |
PRJNA218617 |
